View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_high_20 (Length: 315)
Name: NF16823_high_20
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 16397777 - 16397475
Alignment:
| Q |
13 |
aagaatattgaggttggtgctacattagtgagacatgaagttattggtggagtttggttgtgtatttatgattctattgtccattgtgttatatggtgag |
112 |
Q |
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| T |
16397777 |
aagactattgaggttggtgctacattagtgagacatgaagttattggtggagtttggttgtgtatttatgattctattgtccattgtgttatatggtgag |
16397678 |
T |
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| Q |
113 |
gcggaggtttacatagtaactgttgaaggtgagcctatcataagttatactggcggtattgatggggttgaagccactgctgtgggatctgatgagaaga |
212 |
Q |
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| T |
16397677 |
gcggaggtttacatagtaactgttgaaggtgagcctatcataagttacactggcggtattgatggatttgaagccactgctgtggaatctgatgagaaga |
16397578 |
T |
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| Q |
213 |
ttgatacctcaaggtatgatctttgcaaatattcttctcaactttcgaagttttttcgatatttagtaacgataatgacatgaatcacgtggtttaattt |
312 |
Q |
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| T |
16397577 |
ttgatacctcaaggtatgacctttgcaaatattcttctcaactttcgaagttttttcgatatttagtaacgataatgacatgaatcatgtggtttaattt |
16397478 |
T |
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| Q |
313 |
gtt |
315 |
Q |
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| T |
16397477 |
gtt |
16397475 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 52924909 - 52925008
Alignment:
| Q |
120 |
tttacatagtaactgttgaaggtgagcctatcataagttatactggcggtattgatggggttgaagccactgctgtgggatctgatgagaagattgatac |
219 |
Q |
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| T |
52924909 |
tttatatagtaactgttgaaggtgaacctatcataagttatactggaggtattgatgaatttgaagctactgctgtggaatctgatgaaaaaattgatac |
52925008 |
T |
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