View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_high_32 (Length: 236)
Name: NF16823_high_32
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 43325231 - 43325450
Alignment:
| Q |
2 |
attactaatactaactttggtttcatttggaaaggaattcaccaaaatccatttaaggtttcttgatctttccaatgttctcatccaaaacttaaatctt |
101 |
Q |
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| T |
43325231 |
attactaatactaactttggtttcatttggaaaggaattcaccaaaatccatttaaggtttcttgatctttccaatgttctcatccaaaacttaaatctt |
43325330 |
T |
|
| Q |
102 |
gctttccttgcaccaattgttccaataagccatggtaaatcctctgttgaaactacaggcaatgcaggtacaaaggtaattttcccttcatgttgcggta |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
43325331 |
gctttccttgcaccaattgttccaataagccatggtaaatcctctgttgaaactacaggcaatgcaggtacaaaggtaattttcccttcatgttggggaa |
43325430 |
T |
|
| Q |
202 |
gtcctaccaatacatataac |
221 |
Q |
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|||||||||||||||||||| |
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| T |
43325431 |
gtcctaccaatacatataac |
43325450 |
T |
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