View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_high_38 (Length: 205)
Name: NF16823_high_38
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 38086265 - 38086079
Alignment:
| Q |
1 |
acagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgtaccagattgaacccatgcag |
100 |
Q |
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| T |
38086265 |
acagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgcaccagattgaacccatgcag |
38086166 |
T |
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| Q |
101 |
nnnnnnngtgtacatttatttcaatttctctcaagtttatgagatcaatgacaacaaatggaacttcagagacataagacagaccct |
187 |
Q |
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| T |
38086165 |
tttttttgtgtacatttatttcaatttctctgaagtttatgagatcaatgacaacaaatggaacttcagagacataagacagaccct |
38086079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 38072755 - 38072656
Alignment:
| Q |
1 |
acagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgtaccagattgaacccatgcag |
100 |
Q |
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| T |
38072755 |
acagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcag |
38072656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 38062027 - 38062213
Alignment:
| Q |
1 |
acagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgtaccagattgaacccatgcag |
100 |
Q |
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| T |
38062027 |
acagtaggacaagcaccggcaggaaaaccaagatttcggctttttcggctaattgtgtagtaaagttcaccaagtgttgcaccagattgaacccaagcag |
38062126 |
T |
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| Q |
101 |
nnnnnnngtgtacatttatttcaatttctctcaagtttatgagatcaatgacaacaaatggaacttcagagacataagacagaccct |
187 |
Q |
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| T |
38062127 |
ttcttttttctacatctattgtaatttctctgaagtatgtgaaatcaatgatgacaaatgggacttcagaaacataggaccgaccct |
38062213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 176
Target Start/End: Complemental strand, 38081837 - 38081665
Alignment:
| Q |
4 |
gtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgtaccagattgaacccatgcagnnn |
103 |
Q |
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| T |
38081837 |
gtaggacaagcaccagctgggaaagcaagatttcggcttttttggctaattgtgtagtaaagttcaccaagtgttgcaccagactgaacccaagcagttc |
38081738 |
T |
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| Q |
104 |
nnnngtgtacatttatttcaatttctctcaagtttatgagatcaatgacaacaaatggaacttcagagacata |
176 |
Q |
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| T |
38081737 |
tgctttctacatctacatcaatttccttgaagtttatgagatcaatgacaacaaatggaatttctgaaacata |
38081665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 38058403 - 38058241
Alignment:
| Q |
25 |
aaaccaagagttttgcttttttggctaattgcgtagtaaagttcaccaagtgttgtaccagattgaacccatgcagnnnnnnngtgtacatttatttcaa |
124 |
Q |
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||||||||| ||| | ||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||| || | | ||||| || ||||| |
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| T |
38058403 |
aaaccaagattttggttttttcggtaaattgtgtagtaaagttcaccaattgttgcaccagattgaacccaagctgtcctgttttctacatctacttcaa |
38058304 |
T |
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| Q |
125 |
tttctctcaagtttatgagatcaatgacaacaaatggaacttcagagacataagacagaccct |
187 |
Q |
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||||||| |||||| ||||||||| || | |||||| |||||||| ||||| ||| |||||| |
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| T |
38058303 |
tttctctgaagtttgtgagatcaaggatgataaatgggacttcagaaacataggaccgaccct |
38058241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 37953955 - 37953905
Alignment:
| Q |
135 |
gtttatgagatcaatgacaacaaatggaacttcagagacataagacagacc |
185 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
37953955 |
gtttataagatcaatgacaacaaatggaacttcagaaacataggacagacc |
37953905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 37954086 - 37954036
Alignment:
| Q |
4 |
gtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaatt |
54 |
Q |
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||||| |||| || ||||||||| ||||||||||||||||||||||||||| |
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| T |
37954086 |
gtagggcaaatacctgcagggaagccaagagttttgcttttttggctaatt |
37954036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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