View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_high_6 (Length: 476)
Name: NF16823_high_6
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Complemental strand, 2451403 - 2450955
Alignment:
| Q |
11 |
cacagaaggtgaaagggaccttagaagagagaacaattgaaaatttgttcttgttttccaattttcacttcatacctagctaagaccaagatgattggaa |
110 |
Q |
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| T |
2451403 |
cacagaaggtgaaagggaccttagaagagagaacaattgaaaatttgttcttgttttccaattttcacttcatacctagctaagaccaagatgattggaa |
2451304 |
T |
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| Q |
111 |
aacaaacgtgaattgtttattaatgggcgctcaaaatccatgtctatatataccataggtataagcaagtctatatagcattagtttttatacacactat |
210 |
Q |
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| T |
2451303 |
aacaaacgtgaattgtttattaatgggcgctcaaaatccatgtctatatataccataggtataagcaagt--atatagcattagtttttatacacactat |
2451206 |
T |
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| Q |
211 |
ttgttagaaaatgcataccatggttagtgagcataaacattattcgtctactcatttcattgtttacaaataactacttcaattgaattaacataatata |
310 |
Q |
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| T |
2451205 |
ttgttagaaaatgcataccatggttagtgagcataaacattattcgtctactcatttcattgtttacaaataactacttcaattgaattaacataatata |
2451106 |
T |
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| Q |
311 |
ttcatcatgcaggacttgtttatatctggcctgttgttattttctattgtatcatgcaactcatttgttggatttagtcaaaatacctttaacgtgcttc |
410 |
Q |
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| T |
2451105 |
ttcatcatgcaggacttgtttatatctggtctgttgatattttctattgtatcatgcaactcatttgttggatttagtcaaaatacctttaacgtgcttc |
2451006 |
T |
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| Q |
411 |
aatatggtgccaaaggagatggtacttccgatgatacacaagtatgtatat |
461 |
Q |
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| T |
2451005 |
aatatggtgccaaaggagatggtacttccgatgatacacaagtatgtatat |
2450955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 23730041 - 23729998
Alignment:
| Q |
47 |
ttgaaaatttgttcttgttttccaattttcacttcatacctagc |
90 |
Q |
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| T |
23730041 |
ttgaaaatttgttcttgttttccaattttcacttcatacctagc |
23729998 |
T |
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