View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_high_9 (Length: 429)
Name: NF16823_high_9
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 47501752 - 47502166
Alignment:
| Q |
19 |
atatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacactatgaaataaatatctcagcgggaactaattaaatta |
118 |
Q |
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| T |
47501752 |
atatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacaatatgaaataaatatctcagcgagaac----taaatta |
47501847 |
T |
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| Q |
119 |
tttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatataaaag--------ttta-------tgatctacatc |
203 |
Q |
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| T |
47501848 |
tttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatatagcaggacacttatttactaatattgatctacata |
47501947 |
T |
|
| Q |
204 |
atttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactactaatattggcgtttnnnnnnn |
303 |
Q |
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| T |
47501948 |
atttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactgctaatattggcgtttaaaaaaa |
47502047 |
T |
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| Q |
304 |
nnnnnnnnnnnngataatatgggtggttatagact----tgtgttattttaaagtttcaaaatcaacaagtacttaaattgattaatttttaaagactga |
399 |
Q |
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| T |
47502048 |
tgaaaaagaaaagataatatgggtgcttatagacttgtgtgtgttattttaaagtttcaaaatcaacaagtacttaaattgattaatttttaaagactga |
47502147 |
T |
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| Q |
400 |
ctttttgcatgtgatgatg |
418 |
Q |
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| T |
47502148 |
ctttttgcatgtgatgatg |
47502166 |
T |
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