View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16823_low_1 (Length: 618)
Name: NF16823_low_1
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 215 - 602
Target Start/End: Complemental strand, 50042709 - 50042322
Alignment:
| Q |
215 |
gcggggaggggagcaagcattcccttctttgatttcattttaattccacccacagcgcttcacaataaaaatcaattgcacctaatataaatcaattgca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50042709 |
gcggggaggggagcaagcattcccttctttgatttcattttaattccacccacagcgcttcacaataaaaatcaattgcacctaatataaatcaattgct |
50042610 |
T |
|
| Q |
315 |
tataatatcatgatttatttttgcattcatagtattgaacatattaatttgtggtttttgtacgcagagtacaagtttggaaaaagaggaagcaaaattc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50042609 |
tataatatcatgatttatttttgcattcatagtattgaacatattaatttgtggtttttgtacgcagagtacaagtttggaaaaagaggaagcaaaattc |
50042510 |
T |
|
| Q |
415 |
ttatggctgacagctcagaagtagaagatctatgcgccctaagagaggatgacgagttatatatcatctaatcttcgcaccaaatagagacaattacaat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50042509 |
ttatggctgacagctcagaagtagaagatctatgcgccctaagagaggatgacgagttatatatcatctaatcttcgcaccaaatagagacaattacaat |
50042410 |
T |
|
| Q |
515 |
cttgttatctaaacatgatatgattgcaatgtataaagtaagaaaaacatgcatggaattttgaaatatgtggaaataaaattcttag |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50042409 |
cttgttatctaaacatgatatgattgcaatgtataaagtaagaaaaacatgcatggaattttgaaatatgtggaaataaaattcttag |
50042322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 50042913 - 50042755
Alignment:
| Q |
7 |
atggacatcatcccaacgaaaacattgaaaatggaacaacaccaaagctcattatcctaccagattcagtcgaagatcttctcagagtagcaggtatggg |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50042913 |
atggacatcaccccaacgaaaacattgaaaatggaacaacaccaaagctcattatcctaccagattcagtcgaagatcttctcagagtagcaggtatggg |
50042814 |
T |
|
| Q |
107 |
tataactatctaaattcagtatgcaagcattctcccaaaagattctgagtggtttcacggttg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50042813 |
tataactatctaaattcagtatgcaagcattctc----aagattctgagtggtttcacggttg |
50042755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University