View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_12 (Length: 402)
Name: NF16823_low_12
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 2348512 - 2348133
Alignment:
| Q |
8 |
ataatactttgggataaactttaagctattgatgtctcctaatctatgatgaccatagatttatgaagtaaactatgttaggcttacaacttttaggcac |
107 |
Q |
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| T |
2348512 |
ataatactttgggataaactttaagctattgatgtctcctaatctatgatgaacatagatttatgaagtaaactatgttaggcttacaacttttaggcac |
2348413 |
T |
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| Q |
108 |
atacttccaatacaaacgatgtatagcctaatttcagccatcaatgtgtggaactgcaacagtaccaccttattttccgaaatcaacaacttttaaatga |
207 |
Q |
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| T |
2348412 |
atacttccaatacaaacgatgcatagcctaatttcagccatcaatgtgtggaactgcaacagtaccaccttactttctgaaatcaacaacttttaaatga |
2348313 |
T |
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| Q |
208 |
aaaagacgccatgcgtttactagaaccgttggcaaaataatttccaaaacaaagttatggaaatgaataaaaactgcaattggtgtctgtgtctgtgaat |
307 |
Q |
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| T |
2348312 |
aaaagacgccatgcgtttactagaaccgttggcaaaataatttccaaaacaaagttatggaaatgaataaaaactgcaattggtgtctgtgtctgtgaat |
2348213 |
T |
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| Q |
308 |
gtggggcnnnnnnnatctgtaaaaggctgacctggagaactctgacaagaggtgaggaaggcacatctccaaagagatga |
387 |
Q |
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| T |
2348212 |
gtggggcgggggggatctgtaaaaggctgacctggagaactccgacaagaggtgaggaaggcacatctccaaagagatga |
2348133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 2340320 - 2340259
Alignment:
| Q |
326 |
gtaaaaggctgacctggagaactctgacaagaggtgaggaaggcacatctccaaagagatga |
387 |
Q |
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| T |
2340320 |
gtaaaaggctgacctggagaactccaacaagtggtgaggaaggcacatctccaaagagatga |
2340259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 2340426 - 2340343
Alignment:
| Q |
131 |
tagcctaatttcagccatcaatgtgtggaactgcaacagtaccaccttattttccgaaatcaacaacttttaaatgaaaaagac |
214 |
Q |
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|||||||||||||||||||||||||| || |||||| | ||||| || |||||||||||||||||||| || |||||||||| |
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| T |
2340426 |
tagcctaatttcagccatcaatgtgtcaaaaagcaacaattccaccctactttccgaaatcaacaactttaaagtgaaaaagac |
2340343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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