View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_15 (Length: 381)
Name: NF16823_low_15
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 13519325 - 13519552
Alignment:
| Q |
15 |
actaaaaggcaaaaggatgtatggattcatggtgagtttgacagaattaaaatgtgctaccagaaaatttaggcaaaaatatagttgagcacttcaacca |
114 |
Q |
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||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| |
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| T |
13519325 |
actaaaaggcaaaagtatgtttggatttgtggtgagtttgacagaattaaaacgtgctaccagacaatttaggcaaaaacatagttgagcacttcgacca |
13519424 |
T |
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| Q |
115 |
aatcacaatataatcatagtcttggtgctaccgcaatttaggaaaaactatacttgtgccatgtatgtgatactgatagctcaatgtgggattatattgt |
214 |
Q |
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| T |
13519425 |
aatcacaatatggttatagtcttg-tgctaccgcaatttaggaaaaactatacttgtgccatgtatgtgatactaatagctcaatgcgggattatattgt |
13519523 |
T |
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| Q |
215 |
tttcagacacatacaaaatgaatgctaat |
243 |
Q |
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| T |
13519524 |
tttcagacacatacaaaatgactgctaat |
13519552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 1845339 - 1845516
Alignment:
| Q |
15 |
actaaaaggcaaaaggatgtatggattcatggtgagtttgacagaattaaaatgtgctaccagaaaatttaggcaaaaatatagttgagcacttcaacca |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
1845339 |
actaaaaggcaaaagtatgtatggattcatggtgagtttgacagaattaaaatgtgctaccagacaatttaggcaaaaacatagttgagcacttcaacca |
1845438 |
T |
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| Q |
115 |
aatcacaatataatcatagtcttggtgctaccgcaatttaggaaaaactatacttgtgccatgtatgtgatactgatag |
193 |
Q |
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| T |
1845439 |
aatcacaatatagtcatagtctt-gtgctaccgcaatttaggaaaaactatacttgtgccatgtatgtgatactgatag |
1845516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 56560007 - 56560175
Alignment:
| Q |
19 |
aaaggcaaaaggatgtatggattcatggtgagtttgacagaattaaaatgtgctaccagaaaatttaggcaaaaatatagttgagcacttcaaccaaatc |
118 |
Q |
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||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
56560007 |
aaaggcaaaagtatgtttggattcgtggtgagtttgacagaattaaaacgtgctaccagacaatttaggcaaaaacatagttgagcacttcaaccaaatc |
56560106 |
T |
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| Q |
119 |
acaatataatcatagtcttggtgctaccgcaatttaggaaaaactatacttgtgccatgtatgtgatact |
188 |
Q |
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| T |
56560107 |
acaatatggtcatagtctt-gtgctaccgcaatttaggaaaaactatacttgtgccatgtatgtgatact |
56560175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 7204104 - 7204189
Alignment:
| Q |
17 |
taaaaggcaaaaggatgtatggattcatggtgagtttgacagaattaaaatgtgctaccagaaaatttaggcaaaaatatagttga |
102 |
Q |
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||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
7204104 |
taaaaggcaaaagtatgtttggattcgtggtgagtttgacagaattaaaatgtgctacgagacaatttaggcaaaaacatagttga |
7204189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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