View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_16 (Length: 362)
Name: NF16823_low_16
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_16 |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 48569308 - 48569141
Alignment:
| Q |
1 |
ccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttcca |
100 |
Q |
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| T |
48569308 |
ccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttcca |
48569209 |
T |
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| Q |
101 |
acaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
168 |
Q |
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| T |
48569208 |
accaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
227 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
299 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 10821802 - 10821937
Alignment:
| Q |
27 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
126 |
Q |
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| T |
10821802 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaaccgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcc |
10821901 |
T |
|
| Q |
127 |
tatgactgatttcaatgcagactcagcacactgcaa |
162 |
Q |
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| T |
10821902 |
taagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
27 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
126 |
Q |
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||||||||||||||| ||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
|
| Q |
127 |
tatgactgatttcaatgcagactcagcacactgcaa |
162 |
Q |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
234 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
297 |
Q |
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||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
234 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
297 |
Q |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 467 - 503
Alignment:
| Q |
307 |
ttcactgtctgccatcaactctccaccatctcctcaa |
343 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
467 |
ttcaccgtctgccatcaactctccaccatctcctcaa |
503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 14254153 - 14254117
Alignment:
| Q |
307 |
ttcactgtctgccatcaactctccaccatctcctcaa |
343 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
14254153 |
ttcaccgtctgccatcaactctccaccatctcctcaa |
14254117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 3405 - 3371
Alignment:
| Q |
307 |
ttcactgtctgccatcaactctccaccatctcctc |
341 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
3405 |
ttcaccgtctgccatcaactctccaccatctcctc |
3371 |
T |
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