View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_19 (Length: 341)
Name: NF16823_low_19
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 45 - 323
Target Start/End: Original strand, 31951719 - 31951996
Alignment:
| Q |
45 |
atcaataaatttaatttcacgacacttgtaaaataaattagaggccaatccatacaaagaatatatagattatgaacatatattccaaaggtgacctaaa |
144 |
Q |
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| T |
31951719 |
atcaataaatttaatttcacgacacttgtaaaataaattagaggccaatccatacaaagaacatatagattatgaacatatatttcaaaggtgacctaaa |
31951818 |
T |
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| Q |
145 |
ttctaacgacaacaaattatttgataaagagatatcaagtaaaatagaatcaaacaaaagtgacaattttgtggactaattattttacacatttaacagg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31951819 |
ttctaacgacaacaaattatttgataaagagatatcaagtaaaatagaatcaaacaaaagtgacaattttgtggactatttattttacacatttaacagg |
31951918 |
T |
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| Q |
245 |
atctttagagtttcaaaagcatctaatgactgcaataatttgtattatccaaataggctaatatttttgtggactgttt |
323 |
Q |
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| T |
31951919 |
atc-ttagattttcaaaagcatctaatgactgcaataatttgtattatccaaataggctaatatatttgtgaactgttt |
31951996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 45 - 323
Target Start/End: Original strand, 55320620 - 55320897
Alignment:
| Q |
45 |
atcaataaatttaatttcacgacacttgtaaaataaattagaggccaatccatacaaagaatatatagattatgaacatatattccaaaggtgacctaaa |
144 |
Q |
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| T |
55320620 |
atcaataaatttaatttcatgacacttgtaaaataaattagaggccaatccatacaaagaacatatagattatgaacatatattccaaaggtatcctaaa |
55320719 |
T |
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| Q |
145 |
ttctaacgacaacaaattatttgataaagagatatcaagtaaaatagaatcaaacaaaagtgacaattttgtggactaattattttacacatttaacagg |
244 |
Q |
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| T |
55320720 |
ttctaatgacaacaaattatttgataaagagatatcaagtaaaatagaatcaaactaaagtgacaattttgtggactatttattttacacatttaacagg |
55320819 |
T |
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| Q |
245 |
atctttagagtttcaaaagcatctaatgactgcaataatttgtattatccaaataggctaatatttttgtggactgttt |
323 |
Q |
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| T |
55320820 |
atc-ttagattttcaaaagcatctaatgactgcaataatttgtattgtccaaataggctaatatttttgtggactgttt |
55320897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31951229 - 31951276
Alignment:
| Q |
1 |
aatattaatccattatattgagcactttagtcccctaacttaagatca |
48 |
Q |
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| T |
31951229 |
aatattaatccattatattgagcactttagtcccctaacttaagatca |
31951276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 55320091 - 55320138
Alignment:
| Q |
1 |
aatattaatccattatattgagcactttagtcccctaacttaagatca |
48 |
Q |
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| T |
55320091 |
aatattaatccattatattgagcactttagtcccctaacttaagatca |
55320138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 31607022 - 31606986
Alignment:
| Q |
51 |
aaatttaatttcacgacacttgtaaaataaattagag |
87 |
Q |
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| T |
31607022 |
aaatttaatttcatgacacttgtaaaataaattagag |
31606986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2778319 - 2778272
Alignment:
| Q |
1 |
aatattaatccattatattgagcactttagtcccctaacttaagatca |
48 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2778319 |
aatactaatccattatattgagcactttagtccactaacttaagatca |
2778272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 12632120 - 12632157
Alignment:
| Q |
50 |
taaatttaatttcacgacacttgtaaaataaattagag |
87 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
12632120 |
taaatttaatttcatgacacttgtaaaataaattagag |
12632157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 45290907 - 45290944
Alignment:
| Q |
50 |
taaatttaatttcacgacacttgtaaaataaattagag |
87 |
Q |
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| T |
45290907 |
taaatttaatttcatgacacttgtaaaataaattagag |
45290944 |
T |
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