View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_2 (Length: 584)
Name: NF16823_low_2
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 305 - 576
Target Start/End: Original strand, 43620223 - 43620497
Alignment:
| Q |
305 |
gtaacagtcacgtcacattttttatgttgtggggaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
404 |
Q |
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| T |
43620223 |
gtaacagtcacgtcacattttttatgttgtggagaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
43620322 |
T |
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| Q |
405 |
gaccat---gatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
501 |
Q |
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| T |
43620323 |
gaccatattgatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
43620422 |
T |
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| Q |
502 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatg |
576 |
Q |
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| T |
43620423 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatg |
43620497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 43619323 - 43619616
Alignment:
| Q |
1 |
gattcggtaaatcattaatttctgcttagcatcttatatcacctatgaagcattgacacgaacatcaaatacgatactgatactaacacatcgacactat |
100 |
Q |
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| T |
43619323 |
gattcggtaaatcattaatttctacttagcatcttatatcacctatgaagcattgacacgaacatcaa------------------cacatcgacactat |
43619404 |
T |
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| Q |
101 |
taataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttcttgtaggctggaatccc |
200 |
Q |
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| T |
43619405 |
taataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttcttgtaggctggaatccc |
43619504 |
T |
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| Q |
201 |
agatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcagtaagcgagatttaaaattgt |
300 |
Q |
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| T |
43619505 |
agatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcggtaagtgagatttaaaattgt |
43619604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 486 - 576
Target Start/End: Original strand, 43627035 - 43627125
Alignment:
| Q |
486 |
cgtgagataatgcaagctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatg |
576 |
Q |
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| T |
43627035 |
cgtgaaataatgcaagctgcagctaagagtaatttaaaacatgtttcacttgaattaggaggcaagtcacctctcataattttcgatgatg |
43627125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 43626809 - 43626898
Alignment:
| Q |
188 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatg |
277 |
Q |
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| T |
43626809 |
aggctgggatcccaaatggagtgctgaatgtagtacccggatttggtccaactgctggtgctgcaatcagctcacacatggacatagatg |
43626898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 32407745 - 32407657
Alignment:
| Q |
188 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgat |
276 |
Q |
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| T |
32407745 |
aggctggaattccagatggagtgctcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgat |
32407657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 32434075 - 32434171
Alignment:
| Q |
187 |
taggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcagtaa |
283 |
Q |
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| T |
32434075 |
taggctggtattccagatggagtgctcaatgtactgccaggatttggttcaactgctggagctgcaataacctcacatatggacattgatgcagtaa |
32434171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 576
Target Start/End: Complemental strand, 32407515 - 32407441
Alignment:
| Q |
502 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatg |
576 |
Q |
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| T |
32407515 |
ctgcagctagaagtaatttgaaaccagtttcacttgaattaggaggaaaatcacccctcttaatttttgatgatg |
32407441 |
T |
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