View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_25 (Length: 290)
Name: NF16823_low_25
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 4474298 - 4474036
Alignment:
| Q |
11 |
cagagacatggagagtgttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagt |
110 |
Q |
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| T |
4474298 |
cagagacatggagagtgttcaattcgttcgggaaacgatacattgtcacggctagtccaaggttgatggttgagccatttgttaagacatttttgggagt |
4474199 |
T |
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| Q |
111 |
tgataaggtgctagggactgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagag |
210 |
Q |
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| T |
4474198 |
tgataaggtgctagggactgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagag |
4474099 |
T |
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| Q |
211 |
gcagttatgaaagaatttggaagtgacaatttgcctgatttgggactgggagacagtgtaact |
273 |
Q |
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| T |
4474098 |
gcagttatgaaagaatttggaagtgacaatttgcctgatttgggactgggagacagtgtaact |
4474036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 24571575 - 24571335
Alignment:
| Q |
25 |
gtgttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgctag |
124 |
Q |
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| T |
24571575 |
gtgttcaattcttttggaaagcgttacgttgtcacggctagtccaaggttgatggtggagccatttgttaagaatttgttgggaggtgatagagtgattg |
24571476 |
T |
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| Q |
125 |
ggactgaa-ttgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagaggcagttatgaaag |
223 |
Q |
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| T |
24571475 |
ggactgaacttga-ggtgaccaaatcaggaagggtaactgggtttgttaaggaacctggtgttcttgttggggagctcaagaaagatgctgttgtcaaag |
24571377 |
T |
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| Q |
224 |
aatttggaagtgacaatttgcctgatttgggactgggagacagtg |
268 |
Q |
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| T |
24571376 |
agttt--cagt-ctaatttgcctgatttgggactgggagatagtg |
24571335 |
T |
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