View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_26 (Length: 290)
Name: NF16823_low_26
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 52443972 - 52444246
Alignment:
| Q |
16 |
attagaatagtatatggtaaaataaaaacaatttagtgaaattatcactttctcaaaatcatttaagaaaaactcgaatgatcaatttatatgacccaat |
115 |
Q |
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| T |
52443972 |
attagaatagtatatggtaaaataaaaacaatttagtgaaattatcactttctcaaaatcatttaagaaaaactcgaatgatcaatttatatgacccaat |
52444071 |
T |
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| Q |
116 |
ttaaagtagcaaaactttgtatggactaacccatcaaaattggtaccgatggaaactatatttaaaactttgagaggaacacactccaagatcctaagtc |
215 |
Q |
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| T |
52444072 |
ttaaagtagcaaaactttgtatggactaacccatcgaaattggtaccgatggaaactatatttaaaactttgagaggaacacacttcaagatcctaagtc |
52444171 |
T |
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| Q |
216 |
agcaccaacataccaactcagtcacacttttcttaattcgtgtgaaattatcaaacgggtcactcattttcaaac |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52444172 |
agcaccaacataccaactcagtcacacttttcttaattcgtgtgaaattatcaaacgggtcactcattttcaaac |
52444246 |
T |
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