View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_3 (Length: 575)
Name: NF16823_low_3
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 557
Target Start/End: Original strand, 6261103 - 6261649
Alignment:
| Q |
11 |
cacagacatagtataaaagaaacaaccaacgaagaaacgaaaatagtagttaagaagtgttcaaaaatggcactgaacgatttcttcgccggagaaattg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6261103 |
cacaaacatagtataaaagaaacaaccaacgaagaaacgaaagtagtagttaagaagtgttcaaaaatggcactgaacgatttcttcgccggagaaattg |
6261202 |
T |
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| Q |
111 |
ccacagagcttataaaaatgctcataaacatatctagaaaatctcttctatgcagaacaagcgcagaacaactcatatcatacatcaatgaactcctccc |
210 |
Q |
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| T |
6261203 |
ccacagagcttataaaaatgctcataaacatatctagaaaatctcttctatgcagaacaagcgcagaacaactcatatcatacatcaatgaactcctccc |
6261302 |
T |
|
| Q |
211 |
taccatacaagaaatcaaatactccggcaatgagttaccggagcaaagacagtttcagctcgaccgtttctcagagattctccgttcaggggtcgagctt |
310 |
Q |
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| T |
6261303 |
taccatacaagaaatcaaatactccggcaatgagttaccggagcaaagacagtttcagctcgaccgtttctcagagattctccgttcaggggtcgagctt |
6261402 |
T |
|
| Q |
311 |
tctcacaaagtcttggcttctagcaggtggaacgtgtacaagaatttacagcttgcaaagaagatggagaagcttgaaaagaacatgtcaagatttttgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6261403 |
tctcacaaagtcttggcttctagcaggtggaacgtgtacaagaatttacagcttgcaaagaagatggagaagcttgaaaagaacgtgtcaagatttttgc |
6261502 |
T |
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| Q |
411 |
atggtcccatgcaggctcatatattagctgacgtgcaccacacaaggtatgagatggctgaagggttcgatcgggttgataggaagttggagaagtattt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6261503 |
atggtcccatgcaggctcatatattagctgacgtgcaccacacaaggtatgagatggcagaagggttcgatcgggttgataggaagttggagaagtattt |
6261602 |
T |
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| Q |
511 |
tggtgagatgaagattggcgtgggaggtggagggtgggtgcaggaag |
557 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6261603 |
tggtgagatgaagattggcgtgggaggtggagggtgggtgcaggaag |
6261649 |
T |
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