View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_30 (Length: 278)
Name: NF16823_low_30
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33998584 - 33998846
Alignment:
| Q |
1 |
ggaatttacaaatctggataaagaggtaaactgtttggaaagtgnnnnnnntagtatcgtgaaaacaagagagaaatcactaataattttcactcacttg |
100 |
Q |
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| T |
33998584 |
ggaatttacaaatctggataaagaggtaaacagtttggaaagtgaaaaaaatagtatcgtgaaaacaagagagaaatcactaataattttcactcacttg |
33998683 |
T |
|
| Q |
101 |
ttgtaacagtttctcccttatttccgc--gacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgatagtctatccaaggtga |
198 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33998684 |
ttctaacagtttctcccttatttccgcaagacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgatggtctatccaaggtgg |
33998783 |
T |
|
| Q |
199 |
gacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33998784 |
gacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttg |
33998846 |
T |
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