View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_32 (Length: 268)
Name: NF16823_low_32
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 54459584 - 54459821
Alignment:
| Q |
15 |
caaaggaagagtggagttgtgaactgtgccaaattaaagccacaagtgagagtggcttgaatgctcatctgaatggtaagaagcacaaggccaaggaagc |
114 |
Q |
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| T |
54459584 |
caaaggaagagtggagttgtgaactgtgccaaattaaagccacgagtgagagtggcttgaatgctcatctgaatggtaagaagcacaaggccaaggaagc |
54459683 |
T |
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| Q |
115 |
aggacaaaaaaggaagattgacaagtgcagcaggaaaagtcaaaaaatcgctgaaaagatcactgatacagttgttgtagaaacagatcaacaagctcct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54459684 |
aggacaaaaaaggaagattgacaagtgcagcaggaaaagtcaaaaaaccgctgaaaagattactgatacagttgttgtagaaacagatcaacaagctcct |
54459783 |
T |
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| Q |
215 |
caaccttgcttagccttggaagtcatggatgagactat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
54459784 |
caaccttgcttagccttggaagtcatggatgagactat |
54459821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 54058535 - 54058640
Alignment:
| Q |
21 |
aagagtggagttgtgaactgtgccaaattaaagccacaagtgagagtggcttgaatgctcatctgaatggtaagaagcacaaggccaaggaagcaggaca |
120 |
Q |
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|||||||||||||||||||||| || ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||| | |||||| |||| |
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| T |
54058535 |
aagagtggagttgtgaactgtgtcagattaaagcctcaagtgagaatggcttgaatgatcatctgaatggtaagaagcataaggctagagaagcaagaca |
54058634 |
T |
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| Q |
121 |
aaaaag |
126 |
Q |
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| T |
54058635 |
gaaaag |
54058640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 15038825 - 15038703
Alignment:
| Q |
17 |
aaggaagagtggagttgtgaactgtgccaaattaaagccacaagtgagagtggcttgaatgctcatctgaatggtaagaagcacaaggccaaggaagcag |
116 |
Q |
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||||| |||||||||||||||||||| | ||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||| | ||||||| |
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| T |
15038825 |
aaggaggagtggagttgtgaactgtgtcggattaatgccacgagtgagaatggcttgaatgatcatctgaatggtaagaagcataaggctagggaagcaa |
15038726 |
T |
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| Q |
117 |
gacaaaaaaggaagattgacaag |
139 |
Q |
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|||| |||||| ||||||||||| |
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| T |
15038725 |
gacagaaaagggagattgacaag |
15038703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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