View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_33 (Length: 250)
Name: NF16823_low_33
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44315479 - 44315716
Alignment:
| Q |
1 |
cgctgcttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44315479 |
cgctgcttcatccaacaaggtagaatgtaacaaggttctatcaagcccacaaatcacgcaagccaagaattacaaacaactctcaaaggctatcactgaa |
44315578 |
T |
|
| Q |
101 |
atcgccatgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaagtaaatctgaagggctgaacatatgtgcagattcttgttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44315579 |
atcgccatgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaagtaaatctgaagggctgaacatatgtgcagattcttgttata |
44315678 |
T |
|
| Q |
201 |
gttcagtagttcgggatttcaaaagttgcttggatttt |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44315679 |
gttcagtagttcgggatttcaaaagttgcttggatttt |
44315716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 44308438 - 44308595
Alignment:
| Q |
1 |
cgctgcttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
44308438 |
cgctgcttcatccaacaaggtagaatgtaacaaggttctatcaagcccacaaatcacgcaagccaagaattacaaacaactctcaaaggctgtcattgaa |
44308537 |
T |
|
| Q |
101 |
atcgccatgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaa |
158 |
Q |
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| T |
44308538 |
atggccttaaaaaaagctgtcgaaggacaagcttttcttaaaggattggcacaaaaaa |
44308595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 44194479 - 44194636
Alignment:
| Q |
1 |
cgctgcttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| ||| || |||| |
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| T |
44194479 |
cgctgcttcatccaacaaggtagaatgtagcaatgttctatcgagcccacaaatagcgcaagccaaggataacaaacaactctcaatagctgtcgttgaa |
44194578 |
T |
|
| Q |
101 |
atcgccatgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaa |
158 |
Q |
| |
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|||||||| |||||| |||| |||||||||||||| |||||||| |||||||| |||| |
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| T |
44194579 |
atcgccataaaaaaatctgtcgaaggacaagcttttcttaaaggattggcacaaaaaa |
44194636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 44300913 - 44301070
Alignment:
| Q |
1 |
cgctgcttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| ||| || |||| |
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| T |
44300913 |
cgctgcttcatccaacaaggtagaatgtagcaatgttctatcgagcccacaaatagcgcaagccaaggataacaaacaactctcaatagctgtcgttgaa |
44301012 |
T |
|
| Q |
101 |
atcgccatgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaa |
158 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||| |||||||| |||||||| |||| |
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|
| T |
44301013 |
atcgccataaaaaaatctgtcgaaggacaagcttttcttaaaggattggcacaaaaaa |
44301070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 23715099 - 23714912
Alignment:
| Q |
7 |
ttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaaatcgcc |
106 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||| | ||||||||||||||| | | |||||||||||||| || ||||||||||| |
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| T |
23715099 |
ttcatccaacaaggtagaatgcagcaaggttctatcaagcccacaaaccgcgcaagccaagaattggacagaactctcaaaggctgtcgctgaaatcgcc |
23715000 |
T |
|
| Q |
107 |
atgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaagtaaatctgaagggctgaacatatgtgcagattctt |
194 |
Q |
| |
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|| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||| |||||| |
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| T |
23714999 |
attaaaaaagctgtcgaaggagaagctttccttaaaggattggcacagaaaagtaaatctcaagtgcttgacacatgtgcaaattctt |
23714912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 23733555 - 23733368
Alignment:
| Q |
7 |
ttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaaatcgcc |
106 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||| | ||||||||||||||| | | |||||||||||||| || ||||||||||| |
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| T |
23733555 |
ttcatccaacaaggtagaatgcagcaaggttctatcaagcccacaaaccgcgcaagccaagaattggacagaactctcaaaggctgtcgctgaaatcgcc |
23733456 |
T |
|
| Q |
107 |
atgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaagtaaatctgaagggctgaacatatgtgcagattctt |
194 |
Q |
| |
|
|| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||| |||||| |
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|
| T |
23733455 |
attaaaaaagctgtcgaaggagaagctttccttaaaggattggcacagaaaagtaaatctcaagtgcttgacacatgtgcaaattctt |
23733368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 23752010 - 23751823
Alignment:
| Q |
7 |
ttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaaatcgcc |
106 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||| | ||||||||||||||| | | |||||||||||||| || ||||||||||| |
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|
| T |
23752010 |
ttcatccaacaaggtagaatgcagcaaggttctatcaagcccacaaaccgcgcaagccaagaattggacagaactctcaaaggctgtcgctgaaatcgcc |
23751911 |
T |
|
| Q |
107 |
atgaaaaaagctgttgaaggacaagctttccttaaaggtttggcacagaaaagtaaatctgaagggctgaacatatgtgcagattctt |
194 |
Q |
| |
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|| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||| |||||| |
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| T |
23751910 |
attaaaaaagctgtcgaaggagaagctttccttaaaggattggcacagaaaagtaaatctcaagtgcttgacacatgtgcaaattctt |
23751823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 23696642 - 23696507
Alignment:
| Q |
7 |
ttcatccaacaaggtagaatgtaacaatgttctatcaagcccacaaatctcgcaagccaagaattacaaacaactctcaaaggctatcactgaaatcgcc |
106 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||| | ||||||||||||||| | | |||||||||||||| || ||||||||||| |
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|
| T |
23696642 |
ttcatccaacaaggtagaatgcagcaaggttctatcaagcccacaaaccgcgcaagccaagaattggacagaactctcaaaggctgtcgctgaaatcgcc |
23696543 |
T |
|
| Q |
107 |
atgaaaaaagctgttgaaggacaagctttccttaaa |
142 |
Q |
| |
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|| ||||||||||| |||||| |||||||| ||||| |
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|
| T |
23696542 |
attaaaaaagctgtcgaaggagaagctttctttaaa |
23696507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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