View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16823_low_38 (Length: 221)

Name: NF16823_low_38
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16823_low_38
NF16823_low_38
[»] chr1 (6 HSPs)
chr1 (14-200)||(44315117-44315304)
chr1 (14-125)||(44308142-44308252)
chr1 (14-98)||(44194223-44194307)
chr1 (14-105)||(44300654-44300741)
chr1 (170-200)||(44194131-44194161)
chr1 (172-200)||(44308076-44308104)
[»] chr3 (4 HSPs)
chr3 (14-105)||(23752201-23752292)
chr3 (14-105)||(23715286-23715377)
chr3 (14-105)||(23733742-23733833)
chr3 (17-105)||(23696834-23696922)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 44315304 - 44315117
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaa--ttctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggataccgg 111  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44315304 cataggtgttgaggtattttatagtaacggaaaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggatac-gg 44315206  T
Q  112 cgatccaataatcttcccttcaatcaatggcgctcactcataaattgacctcttgactactcttgtgtcattttcctgtttggctctta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44315205 cgatccaataatcttcccttcaatcaatggcgctcactcataaattgacctcttgactactcttgtgtcattttcctgtttggctctta 44315117  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 44308252 - 44308142
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggataccggcg 113  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| || |||||| |||||| | |||||    
T  44308252 cataggtgttggggtgttttatagtaacggaaattctaatttaaggtaattaacatatttttagcaaatcacagcaatggtgatgcttggga-aacggcg 44308154  T
Q  114 atccaataatct 125  Q
    ||||||||||||    
T  44308153 atccaataatct 44308142  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 44194307 - 44194223
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatg 98  Q
    |||||||||||  || ||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||| |||||| ||||||    
T  44194307 cataggtgttggagtgttttatagtaacgaaaattctaatttaggataattaacatatttttagcaaatcatagcgatggtgatg 44194223  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 44300741 - 44300654
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga 105  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||    |||| ||| |  ||||||||||||||| |||| ||||||    
T  44300741 cataggtgttggagtgttttatagtaacggaaattctaatttagggtaa----cgtactttcaagaaatcacagcgattgcgatgcttggga 44300654  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 44194161 - 44194131
Alignment:
Q  170 actcttgtgtcattttcctgtttggctctta 200  Q
    |||||||||||||||||||||||||||||||    
T  44194161 actcttgtgtcattttcctgtttggctctta 44194131  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 44308104 - 44308076
Alignment:
Q  172 tcttgtgtcattttcctgtttggctctta 200  Q
    |||||||||||||||||||||||||||||    
T  44308104 tcttgtgtcattttcctgtttggctctta 44308076  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 23752201 - 23752292
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga 105  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  23752201 cataggtgttggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga 23752292  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 23715286 - 23715377
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga 105  Q
    ||||||||||| ||| |||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  23715286 cataggtgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga 23715377  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 23733742 - 23733833
Alignment:
Q  14 cataggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga 105  Q
    ||||||||||| ||| |||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  23733742 cataggtgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga 23733833  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 23696834 - 23696922
Alignment:
Q  17 aggtgttgaggtattttatagtaacggaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttggga 105  Q
    |||||||| ||| |||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  23696834 aggtgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttggga 23696922  T

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