View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16823_low_39 (Length: 215)

Name: NF16823_low_39
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16823_low_39
NF16823_low_39
[»] chr1 (3 HSPs)
chr1 (20-201)||(9094356-9094537)
chr1 (20-81)||(44163550-44163611)
chr1 (21-80)||(14344324-14344383)
[»] chr5 (5 HSPs)
chr5 (20-80)||(32278499-32278559)
chr5 (20-80)||(1442745-1442805)
chr5 (22-75)||(36868541-36868594)
chr5 (34-75)||(19215656-19215697)
chr5 (34-75)||(20817516-20817557)
[»] chr2 (3 HSPs)
chr2 (20-73)||(37344844-37344897)
chr2 (24-72)||(14296055-14296103)
chr2 (26-75)||(31092564-31092613)
[»] chr7 (4 HSPs)
chr7 (20-80)||(34548151-34548211)
chr7 (20-78)||(16099834-16099892)
chr7 (26-73)||(7543902-7543949)
chr7 (26-54)||(19407690-19407718)
[»] chr6 (3 HSPs)
chr6 (20-80)||(3949606-3949666)
chr6 (20-80)||(25168114-25168174)
chr6 (20-79)||(2606659-2606718)
[»] chr4 (2 HSPs)
chr4 (20-80)||(37050272-37050332)
chr4 (22-63)||(24239657-24239698)
[»] chr3 (3 HSPs)
chr3 (24-80)||(49106830-49106886)
chr3 (26-73)||(29347075-29347122)
chr3 (26-80)||(35526357-35526411)
[»] chr8 (3 HSPs)
chr8 (34-75)||(3801240-3801281)
chr8 (22-75)||(27786605-27786658)
chr8 (26-75)||(29369351-29369400)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 9094356 - 9094537
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatgcattccaagaacttttatcactttaatttgggtatatgt 119  Q
    ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||  ||||||| ||||||||||||||||| |||||||||||||||||    
T  9094356 agagttacatagtgtaaaacctatgaaaagagaaataagatctattccaagaaagaaaatgcatcccaagaacttttatcaccttaatttgggtatatgt 9094455  T
Q  120 gttataggtaactggaatttaattattaattgtcatgttagccatgattaaaaatatgagactttgtaattagagctctctg 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9094456 gttataggtaactggaatttaattattcattgtcatgttagccatgattaaaaatatgagactttgtaattagagctctctg 9094537  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 44163550 - 44163611
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatgc 81  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  44163550 agagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaggtaatgc 44163611  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 14344383 - 14344324
Alignment:
Q  21 gagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||| |||| ||||||||  |||||||||| ||||| |||||||||||| ||||||||||    
T  14344383 gagttacattgtgtaaaatttatgaaaagaaaaatcggatctatcccaaaaaagggaatg 14344324  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 32278499 - 32278559
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  32278499 agagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaaggaatg 32278559  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 1442745 - 1442805
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    ||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||    
T  1442745 agagtcacatattgtaaaacataagaaaagagaaaccagatctatcccaagaaagggaatg 1442805  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 36868594 - 36868541
Alignment:
Q  22 agtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    |||||||  |||||| ||||||||||||| ||||| ||||||||||||||||||    
T  36868594 agtcacaatgtgtaagacctatgaaaagaaaaatcggatctatcccaagaaagg 36868541  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 19215697 - 19215656
Alignment:
Q  34 taaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  19215697 taaaacctatgaaaagagaaactagatctattccaagaaagg 19215656  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 20817516 - 20817557
Alignment:
Q  34 taaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  20817516 taaaacctgtgaaaagaaaaatcagatctatcctaagaaagg 20817557  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 37344897 - 37344844
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaa 73  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  37344897 agagtcacatagtgtaaaacctacgaaaagagaaatcggatctatcccaagaaa 37344844  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 14296055 - 14296103
Alignment:
Q  24 tcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaa 72  Q
    ||||| |||| |||||||||||||||| |||||| ||||||||||||||    
T  14296055 tcacaaagtgaaaaacctatgaaaagaaaaatcaaatctatcccaagaa 14296103  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 31092613 - 31092564
Alignment:
Q  26 acatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    |||||| |||||||||||||||||||||   ||||| |||||||||||||    
T  31092613 acatagagtaaaacctatgaaaagagaatctagatcaatcccaagaaagg 31092564  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 34548211 - 34548151
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||    
T  34548211 agagtcacttagtgaaaaatctatgaaaagagaaatcggatctatcccaagaaagggaatg 34548151  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 16099892 - 16099834
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaa 78  Q
    ||||||| ||| ||||||||||||| ||||||||| | |||||||||| ||||||||||    
T  16099892 agagtcatataatgtaaaacctatggaaagagaaaccggatctatcccgagaaagggaa 16099834  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 7543902 - 7543949
Alignment:
Q  26 acatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaa 73  Q
    |||||| |||||||||||||||||||||| | | ||||||||||||||    
T  7543902 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 7543949  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 19407690 - 19407718
Alignment:
Q  26 acatagtgtaaaacctatgaaaagagaaa 54  Q
    |||||||||||||||||||||||||||||    
T  19407690 acatagtgtaaaacctatgaaaagagaaa 19407718  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 3949666 - 3949606
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  3949666 agagacacatagtgtaaaacctatgaaaagagaaaccggatctatcctaagaaagggaatg 3949606  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 25168174 - 25168114
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||| ||||||||||    
T  25168174 agagtcacatagtgtaaaacctatgaaaagagaaactaaatctatcccaataaagggaatg 25168114  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 2606659 - 2606718
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaat 79  Q
    ||||||||| |||| ||||||||||||||||||||   ||||||||| ||||||||||||    
T  2606659 agagtcacaaagtgaaaaacctatgaaaagagaaactggatctatcctaagaaagggaat 2606718  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 37050332 - 37050272
Alignment:
Q  20 agagtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||    
T  37050332 agagtcacatagtgtaaaacctatgaaaagagaaactggatctatcccaataaagggaatg 37050272  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 24239657 - 24239698
Alignment:
Q  22 agtcacatagtgtaaaacctatgaaaagagaaatcagatcta 63  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  24239657 agtcacaaagtgtaaaacctatgaacagaaaaatcagatcta 24239698  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 49106830 - 49106886
Alignment:
Q  24 tcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  49106830 tcacatagtgaaaaacctatgaaaagagaaaccggatctatcccaagaaagggaatg 49106886  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 29347122 - 29347075
Alignment:
Q  26 acatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaa 73  Q
    |||||| |||||||||||||||||||||| | | ||||||||||||||    
T  29347122 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 29347075  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 35526357 - 35526411
Alignment:
Q  26 acatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagggaatg 80  Q
    |||||| ||||||| |||||||||||||| |||| |||| |||||||||| ||||    
T  35526357 acatagagtaaaacttatgaaaagagaaaccagagctattccaagaaaggaaatg 35526411  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 3801281 - 3801240
Alignment:
Q  34 taaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    ||||||||||||||||||||| | ||||||||| ||||||||    
T  3801281 taaaacctatgaaaagagaaaccggatctatcctaagaaagg 3801240  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 27786605 - 27786658
Alignment:
Q  22 agtcacatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    |||||||  |||||| ||||||||||||| || || ||||||||||||||||||    
T  27786605 agtcacaatgtgtaagacctatgaaaagaaaagtcggatctatcccaagaaagg 27786658  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 29369400 - 29369351
Alignment:
Q  26 acatagtgtaaaacctatgaaaagagaaatcagatctatcccaagaaagg 75  Q
    |||||| |||||||||||||||||||||  | |||| |||||||||||||    
T  29369400 acatagagtaaaacctatgaaaagagaatccggatcaatcccaagaaagg 29369351  T

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