View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_5 (Length: 518)
Name: NF16823_low_5
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 42154379 - 42154818
Alignment:
| Q |
18 |
aggtctaaccttggctctaatccttttaattctagcacatggttgatgatggagtttattgctttgattgtccaaataatcatttcaactttcactttgg |
117 |
Q |
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| T |
42154379 |
aggtctaaccttggctctaatcctttcaattctagcacatggttgatgatggaatttattgctttgattatccaaataatcatttcaactttcactttgg |
42154478 |
T |
|
| Q |
118 |
ttatttcaaagagggagaaacctgtttggcctatgaggatttggatatctggttatgatattggatgtgttcttaatttgcttactgtgtatggtcgata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
42154479 |
ttatttcaaagagggagaaacctgtttggcctatgaggatttggatatctggttatgatattggatgtgttcttaatttgcttaccgtgtacggtcgata |
42154578 |
T |
|
| Q |
218 |
ccgacaaatttatctgattcaaggagatgctctaagcctttctgatattgaacagcagagaaatagtggagaaacaaggt-atcctattccctttcaatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42154579 |
ccgacaaatttatctgattcaaggagatgctctaagcctttctgatattgaacagcagagaaatagtggagaaacaaggtaatcctattccctttcaatc |
42154678 |
T |
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| Q |
317 |
ttcaagaatttcctttagtcaattttgttattagtgatgcataatagtactatagtaattacaaataagtaatcacctatataaggtattaattaatctt |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42154679 |
ttcaagaatttcctttagtcaattttgttatt---------------------agtaattacaaataagtaatcacctatataaggtattaattaatctt |
42154757 |
T |
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| Q |
417 |
ctgagtatggttataaattataatggactagtaaagattgacaccatttcatatttttggtt |
478 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
42154758 |
ctgagtatggttataaattataatgggctagaaaagattgacacca-ttcatatttttggtt |
42154818 |
T |
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