View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_8 (Length: 453)
Name: NF16823_low_8
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 8899677 - 8899252
Alignment:
| Q |
20 |
gacctgagattcatgattcatagaaatcgaagatactataatattctaacagttttcgctcacgggcatgcagtgatgtcttctcgtgattcacgtagca |
119 |
Q |
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| T |
8899677 |
gacctgagattcatgattcatagaaatcgaagatactataatattctaacagttttcgctcacgggcatgcagtgatgtcttctcgtgattcacgtagca |
8899578 |
T |
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| Q |
120 |
cggtaatgaagtgcatgtgtagaggtgcagctgattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaaagca |
219 |
Q |
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| T |
8899577 |
cggtaatgaagtgcatgtgtagaggtgcagctgattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaaagca |
8899478 |
T |
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| Q |
220 |
cgttgtatgtcatatttctgaatcnnnnnnnnnctttatgtatttccttctctgactgtgtcctagaaatttatcatatatgtacttgtgcttgttttaa |
319 |
Q |
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| T |
8899477 |
cgttgtatgtcatatttctggatc-ttttttttctttatgtatttccttctctgactgtgtcctagaaatttatcatatatgtacttgtgcttgttttaa |
8899379 |
T |
|
| Q |
320 |
tctctgtcgtatgttatttatacagattagcaggcctctccaaaatacaacatccgcacaaagcaaccttaaaattgcgacagaagacaattttccttgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
8899378 |
tctctgtcgtatgttatttatacagattagcaggcctctccaaaatacaacatctgcacaaagtaaccttaaaattgcgacagaagacaattttcctcgc |
8899279 |
T |
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| Q |
420 |
aaccaatcgactgattctgcttctgtg |
446 |
Q |
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| T |
8899278 |
agccaatcgactgattctgcttctgtg |
8899252 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 49082703 - 49082766
Alignment:
| Q |
152 |
gattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaa |
215 |
Q |
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| T |
49082703 |
gattttctcattaaaccagttcgcaggaatgagcttaggaacttgtggcagcatgtgtggagaa |
49082766 |
T |
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