View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_low_9 (Length: 434)
Name: NF16823_low_9
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Complemental strand, 33125274 - 33124865
Alignment:
| Q |
10 |
agatgaagaggtaattccaagggttttccatatcattgag-ttttacttagatttatacaatatgttaaattcttgtgtgcaggtccctttactagacaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33125274 |
agatgaagaggtaattccaagggttttccatatcattgaggttttacttagatttatacaatatgttaaattcttgtgttcaggtccctttactagacaa |
33125175 |
T |
|
| Q |
109 |
cattcactggaaggagttatcagttcttatgtatgtttgggtggcttttctcattgttcaaattcttaaggtagttaatatttggttttttctctgattc |
208 |
Q |
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| T |
33125174 |
cattcactggaaggagttatcagttcttatgtatgtttgggtggcttttctcattgttcaaattcttaaggtagttaatatttggttttttctctgattc |
33125075 |
T |
|
| Q |
209 |
attagttataatcaatcatcttgtgtgt-ttttaactaaatatgcactttctatttatttcaatgcagacatacagcaaaacttgttccatagagtattg |
307 |
Q |
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| T |
33125074 |
gttagttataaacaatcatcttgtgtgtgttttaactaaatatgcactttctatttatttcaatgcagacatacagcaaaacttgttccatagagtattg |
33124975 |
T |
|
| Q |
308 |
gcttcttaattccttgcaggtaaatattctatatatatatttggaatcttggatactaatacacatgatatgtatttaactttgaaatctagttgtatga |
407 |
Q |
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| T |
33124974 |
gcttcttaattccttgcaggtaaatattctatatatatatttggaatcttggttactaatacacatgatatgtatttaactttgaaatctagttgtatga |
33124875 |
T |
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| Q |
408 |
cttcatagat |
417 |
Q |
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| T |
33124874 |
cttcatagat |
33124865 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 7570548 - 7570609
Alignment:
| Q |
270 |
atgcagacatacagcaaaacttgttccatagagtattggcttcttaattccttgcaggtaaa |
331 |
Q |
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| T |
7570548 |
atgcagacatacaccaagacttgctccattgagtattggattcttaatttcttgcaggtaaa |
7570609 |
T |
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