View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16824_high_1 (Length: 479)
Name: NF16824_high_1
Description: NF16824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16824_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 6456658 - 6457015
Alignment:
| Q |
10 |
catcatcaaaacccttcaatcctcttaccttttgcaaagcactttctttatcataagtaccttccatagcatatataaaacctttccacccttcaccaac |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456658 |
catcatcaaaacccttcaatcctcttaccttttgcaaagcactttgtttatcataagtaccttccatagcatatataaaacctttccacccttcaccaac |
6456757 |
T |
|
| Q |
110 |
acctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456758 |
acctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaact |
6456857 |
T |
|
| Q |
210 |
tgaatacctagcctacactctctccattgagcaggcgcaaaccatagtccactatctctcttattagaccaaacaacactcactactttgttctctttgg |
309 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456858 |
tgaatacctagcctacactctctccattgagcaggcgcaaaccatagtccactatctctcttattagaccaaacaacactcactactttgttctctttgg |
6456957 |
T |
|
| Q |
310 |
aaaattcttcggcataaagtttatctccgccttttatatgccaccacatttgagctgc |
367 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456958 |
aaaattcttcagcataaagtttatctccgccttttatatgccaccacatttgagctgc |
6457015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 52 - 479
Target Start/End: Complemental strand, 6462672 - 6462245
Alignment:
| Q |
52 |
tttctttatcataagtaccttccatagcatatataaaacctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaagctc |
151 |
Q |
| |
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|||| ||||||||| | |||| | |||||||| ||| |||||||| ||||| ||||||| | || |||||| ||| ||||||||||| ||||| | |
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| T |
6462672 |
tttccttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttg |
6462573 |
T |
|
| Q |
152 |
ctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctccattgagcaggcgcaaac |
251 |
Q |
| |
|
||| ||||| ||||||| || |||||| | || | ||||| | ||| ||||| | ||||| || || ||||| ||||| ||| || || |||||| |
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| T |
6462572 |
cttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaac |
6462473 |
T |
|
| Q |
252 |
catagtccactatctctcttattagaccaaacaacactcactactttgttctctttggaaaattcttcggcataaagtttatctccgccttttatatgcc |
351 |
Q |
| |
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|| |||||||| |||||||| |||||||| | || | || | |||||||||| | ||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
6462472 |
caaagtccactttctctcttgttagaccatagaaatcccatgatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgcc |
6462373 |
T |
|
| Q |
352 |
accacatttgagctgctttaattccaaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgctgctgaata |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6462372 |
accacatttgagctgctttaattccaaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgctgctgaata |
6462273 |
T |
|
| Q |
452 |
atatgcatttgcagcttggcttgtgctc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
6462272 |
atatgcatttgcagcttggcttgtgctc |
6462245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 311 - 479
Target Start/End: Original strand, 6496259 - 6496427
Alignment:
| Q |
311 |
aaattcttcggcataaagtttatctccgccttttatatgccaccacatttgagctgctttaattccaaaagctaatagtgtcgatccattgataaaaagg |
410 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
6496259 |
aaattcttcggcatatagttttcctccttcttttatatgccaccacatttgagccgctttaattccaaaggctaaaagtgtcgatccaaggataaaaagg |
6496358 |
T |
|
| Q |
411 |
tctgcgtcgttatatgccaaacccatcagtgctgctgaataatatgcatttgcagcttggcttgtgctc |
479 |
Q |
| |
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||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |
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| T |
6496359 |
tctgcgtcgttgtacgccaaacccatcaatgctgccgaataatatgcatttgcagcttgacttgtgctc |
6496427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 6464618 - 6464975
Alignment:
| Q |
10 |
catcatcaaaacccttcaatcctcttaccttttgcaaagcactttctttatcataagtaccttccatagcatatataaaacctttccacccttcaccaac |
109 |
Q |
| |
|
||||||||||||| ||||| | ||||| ||| | ||| ||||||| ||||||||| ||||||| ||||| | ||| |||||||| ||||| ||||| |
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| T |
6464618 |
catcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaaccctttccatccttctccaac |
6464717 |
T |
|
| Q |
110 |
acctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaact |
209 |
Q |
| |
|
||||| |||||||||| ||| |||||||| |||||||| ||||| ||| || |||||| ||||| || || | || || | ||| ||||| | |
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|
| T |
6464718 |
accttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaagagc |
6464817 |
T |
|
| Q |
210 |
tgaatacctagcctacactctctccattgagcaggcgcaaaccatagtccactatctctcttattagaccaaacaacactcactactttgttctctttgg |
309 |
Q |
| |
|
||||| || |||||||| ||| |||||| || ||| |||||||||| |||||| |||||||| |||| ||||| ||||| || || || |||||||| | |
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| T |
6464818 |
tgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgttagcccaaagaacaccaaccaccttattctctttcg |
6464917 |
T |
|
| Q |
310 |
aaaattcttcggcataaagtttatctccgccttttatatgccaccacatttgagctgc |
367 |
Q |
| |
|
||| | ||| | |||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
6464918 |
caaaaacctcgtcgtaaacattatctccaccttttacatgccaccacatttgagctgc |
6464975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 6473897 - 6473666
Alignment:
| Q |
49 |
cactttctttatcataagtaccttccatagcatatataaaacctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaag |
148 |
Q |
| |
|
||||||| ||||||||| | |||| || ||||| | |||||||||||| ||||| ||||||||| |||||| ||| | | |||||||| |||||||| |
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|
| T |
6473897 |
cactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctatttaaagcaagcaatgtccactccacaag |
6473798 |
T |
|
| Q |
149 |
ctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctccattgagcaggcgca |
248 |
Q |
| |
|
||||| |||||| ||||||| |||||||| | || | ||||| | ||| |||| | ||||| || |||||||| ||| ||||| ||| || ||| |
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|
| T |
6473797 |
ttccttcacataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagca |
6473698 |
T |
|
| Q |
249 |
aaccatagtccactatctctcttattagacca |
280 |
Q |
| |
|
||||||| |||||| |||||||| |||||||| |
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|
| T |
6473697 |
aaccataatccactgtctctcttgttagacca |
6473666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 4045641 - 4045783
Alignment:
| Q |
134 |
tgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctc |
233 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||| ||||| | ||| || |||||||||||||| |||||||| |||| |||||||||||||| |
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|
| T |
4045641 |
tgtccattccacaagctccttagcataaacaccatcgttgaacaaagactcagttataggcaacaaaggcaaaacttgtatactaagcctacactctcta |
4045740 |
T |
|
| Q |
234 |
cattgagcaggcgcaaaccatagtccactatctctcttattag |
276 |
Q |
| |
|
|||| || | || |||||||| |||||||||| ||||||| |
|
|
| T |
4045741 |
cattcagatgaagcccaccatagtgcactatctcttttattag |
4045783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 3754597 - 3754455
Alignment:
| Q |
134 |
tgtccattccacaagctcctttacataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctc |
233 |
Q |
| |
|
|||||||||||| |||||||| ||||| || |||| |||||| | ||| || |||||||||||||| | |||||| |||| | ||||||| |||| |
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|
| T |
3754597 |
tgtccattccactagctccttagcataaacaccatcattaaacaaagactcagtaataggcaacaaaggcataacttggatactaaccctacaccctcta |
3754498 |
T |
|
| Q |
234 |
cattgagcaggcgcaaaccatagtccactatctctcttattag |
276 |
Q |
| |
|
|||| || ||| || |||| ||| ||||||||||||||||| |
|
|
| T |
3754497 |
cattcagaaggagcccaccaaagtttactatctctcttattag |
3754455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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