View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16825_high_1 (Length: 1158)
Name: NF16825_high_1
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 750 - 1151
Target Start/End: Original strand, 928079 - 928480
Alignment:
| Q |
750 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
849 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928079 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
928178 |
T |
|
| Q |
850 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
949 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928179 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
928278 |
T |
|
| Q |
950 |
tttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaac |
1049 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928279 |
tttcacagcacatgtgacaatccctttaccccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaac |
928378 |
T |
|
| Q |
1050 |
aaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgc |
1149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928379 |
aaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgc |
928478 |
T |
|
| Q |
1150 |
tg |
1151 |
Q |
| |
|
|| |
|
|
| T |
928479 |
tg |
928480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 309 - 588
Target Start/End: Original strand, 927018 - 927297
Alignment:
| Q |
309 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
927018 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
927117 |
T |
|
| Q |
409 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
927118 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
927217 |
T |
|
| Q |
509 |
tatagctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
588 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
927218 |
tatacctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
927297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 926250 - 926560
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctt---tggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagttta |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
926250 |
gagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagttta |
926349 |
T |
|
| Q |
98 |
tttggatgcattcaacaagtgtttatttttaggctatttataaa----gtcatggagatgnnnnnnnggaagttgcacggaagaaaggtcgaagttggga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
926350 |
tttggatgcattcaacaagtgtttatttttaggctatttataaataaagtcatggagatgaaaaaaaggaagttgcacggaagaaaggtcgaagttggga |
926449 |
T |
|
| Q |
194 |
tcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
926450 |
tcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaag |
926549 |
T |
|
| Q |
294 |
ctcacatccat |
304 |
Q |
| |
|
||||||||||| |
|
|
| T |
926550 |
ctcacatccat |
926560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 750 - 1151
Target Start/End: Original strand, 938998 - 939405
Alignment:
| Q |
750 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
849 |
Q |
| |
|
|||||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
938998 |
agttggagatcagtagaaagaacactgaaaataatcatatctctgctttttcctttcatgaccaaatacttcccaagagttccctccttttggaaaccag |
939097 |
T |
|
| Q |
850 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
949 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| || || ||| |||||||| |||||| | ||| |
|
|
| T |
939098 |
ctttctccaaaaccctttgagatccaacattttccacatcaacaaaagcttcaactctttccaagtgtgacaactcactgaatgcaaccttaactacttg |
939197 |
T |
|
| Q |
950 |
tttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtg----t |
1045 |
Q |
| |
|
||||||| || | ||| | || ||||||| ||| ||||||||| |||| |||| |||||||||||| || |||||||||||||| | ||||| | |
|
|
| T |
939198 |
tttcacaacatacgtggctattcctttaccccagtatttagaggctagaacataggcaagttctgcagttttgttcctgcttttatcatgaggtgatctt |
939297 |
T |
|
| Q |
1046 |
ga--acaaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatctt |
1143 |
Q |
| |
|
|| || | ||||| |||||||||||||| |||| ||||||||||||||| || ||||||||| || |||| |||| |||||| ||||||| | || |
|
|
| T |
939298 |
gatttcagagaaacacggccaatagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgtt |
939397 |
T |
|
| Q |
1144 |
ctctgctg |
1151 |
Q |
| |
|
|| ||||| |
|
|
| T |
939398 |
ctttgctg |
939405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 750 - 1141
Target Start/End: Original strand, 923718 - 924115
Alignment:
| Q |
750 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
849 |
Q |
| |
|
|||||| ||||| || | |||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
923718 |
agttggggatcagtaaagagaacactggagatgatcatatctctactttttcctttcatgaccaaatatttcctaagaactccctctttttggaaaccag |
923817 |
T |
|
| Q |
850 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
949 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||| |||||||| |||||| | ||| |
|
|
| T |
923818 |
ctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctttccaagtaagacaactcacagaatgcaaccttaaccacttg |
923917 |
T |
|
| Q |
950 |
tttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------ |
1043 |
Q |
| |
|
||||||| |||| ||| ||| |||||||| |||||||||||||| |||| |||||||||||||||| ||| |||||| |||||| ||||| |
|
|
| T |
923918 |
tttcacaacacaagtggcaacccctttaccccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactc |
924017 |
T |
|
| Q |
1044 |
gtgaacaaaagaacacagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatc |
1141 |
Q |
| |
|
| | | | | |||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||| | | ||| |||| ||||||||||||||||| |
|
|
| T |
924018 |
gaggatagagaaacacacccaattgcacgatcattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatc |
924115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 591 - 756
Target Start/End: Original strand, 927849 - 928013
Alignment:
| Q |
591 |
ctaagactgttttaacttcgcttgcctgttactttcctttcttaacaaggcaaacctcaaatatcacnnnnnnnnnnnnnntgtaatacatcagaattga |
690 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
927849 |
ctaaaactgttttaacttcgcttgcctattactttcctttcttaacaaggcaaacctcaaatatcacaaaaaaagaaaaa-tgtaatacatcagaattga |
927947 |
T |
|
| Q |
691 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacttattaaagttgga |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
927948 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacgtattaaagttgga |
928013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 750 - 992
Target Start/End: Original strand, 935209 - 935451
Alignment:
| Q |
750 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccag |
849 |
Q |
| |
|
||||| |||||| || |||||| ||| ||||||||||||||||||||||||||||| | || | ||||||||||||| ||||| ||||| |||||| |
|
|
| T |
935209 |
agttgaagatcagtaaaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaaaaccaa |
935308 |
T |
|
| Q |
850 |
ctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttg |
949 |
Q |
| |
|
||||||| | || |||| ||||||||||| |||| |||||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||| |
|
|
| T |
935309 |
ctttctcaagtactttttgcgacccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttg |
935408 |
T |
|
| Q |
950 |
tttcacagcacatgtgacaatccctttacaccaatatttagag |
992 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
935409 |
tttcacagcacatgtggcaatccctttaccccaatatttagag |
935451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 758 - 992
Target Start/End: Original strand, 925755 - 925995
Alignment:
| Q |
758 |
atcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctcc |
857 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||||||||||||||| | || | |||||| |||||| |||||| ||||| |||||| |||| || |
|
|
| T |
925755 |
atcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctctttttgaaaaccaactttttca |
925854 |
T |
|
| Q |
858 |
aaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgc------aatcttaacaatttgtt |
951 |
Q |
| |
|
| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||| || | |||| ||||||| |
|
|
| T |
925855 |
agtactctttgtgacccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtt |
925954 |
T |
|
| Q |
952 |
tcacagcacatgtgacaatccctttacaccaatatttagag |
992 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||| ||||||||| |
|
|
| T |
925955 |
tcacagcacacgtggcaatccctttaccccagtatttagag |
925995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 793 - 1118
Target Start/End: Original strand, 940075 - 940404
Alignment:
| Q |
793 |
tgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaac |
892 |
Q |
| |
|
||||||| ||||||||| || |||||| || || ||| ||||||||||||||||||||||||| || || |||||||||| ||||||||||| | |
|
|
| T |
940075 |
tgcttttccctttcatgttcagatactttctgagtactccttccttttggaaaccagctttctccagcactctcagagacccaacgttttccacatctaa |
940174 |
T |
|
| Q |
893 |
aagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaca-ccaatatttaga |
991 |
Q |
| |
|
||| |||||||||||||| || | ||| ||| |||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
940175 |
taga--ttcaagcctttccatgtgtggaaactcactgaatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttata |
940272 |
T |
|
| Q |
992 |
gcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaatagcacgatcattaatgcat |
1085 |
Q |
| |
|
|| |||| ||||||||||||| || ||| ||||||| || ||| | |||| | ||||||| ||| || || |||| ||||||||| | |||| |
|
|
| T |
940273 |
gcctagaacatagccaagttctacacatttgttcctgcattcatcgt-aggtaatctcgaaaacaaaataactcacccgatagtacgatcattgaggcat |
940371 |
T |
|
| Q |
1086 |
attgctttgcaacaaagaaacttgctttctata |
1118 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||| |
|
|
| T |
940372 |
attgttttgcaacatagatacttgctttctata |
940404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
210 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
292 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 928570 - 928641
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccat |
72 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||||||||| || |||||||||||||| ||||| |
|
|
| T |
928570 |
gagtgtgatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccat |
928641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 939495 - 939569
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctttggcacatggtttggaggaaataaaagtttcttccataac |
75 |
Q |
| |
|
||||||||||||||||||||| ||| | | ||| ||| ||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
939495 |
gagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataac |
939569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 935703 - 935740
Alignment:
| Q |
1 |
gagtgtgatttggttcaaatcgatgatctcttctttgg |
38 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
935703 |
gagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 831 - 1029
Target Start/End: Original strand, 46648079 - 46648277
Alignment:
| Q |
831 |
ccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcga |
930 |
Q |
| |
|
|||||| |||| |||||||| |||||||| || || ||||| | | ||||||||||||||| |||||||||||||||||||||| | ||| || | | |
|
|
| T |
46648079 |
ccctccctttgaaaaccagccttctccaatactctctgagaagccatattttccacatcaacttgagcttcaagcctttccaagtatggaaactccttaa |
46648178 |
T |
|
| Q |
931 |
atgcaatcttaacaatttgtttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgc |
1029 |
Q |
| |
|
||||| | ||| | |||||| ||| || |||| |||||||||| | |||||| || ||||| | | |||||||||||| ||||||| ||||||| |
|
|
| T |
46648179 |
atgcagcttcaaccacttgtttgacaacaagtgtggcaatccctttgccccaatacttggagctcatagcatagccaagttcagcagatttgttcctgc |
46648277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 843 - 916
Target Start/End: Original strand, 46656419 - 46656492
Alignment:
| Q |
843 |
aaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagta |
916 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | ||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
46656419 |
aaaccagccttctccaacaccctttgagaagccacattttccacatcaactcgagcctcaagcctctccaagta |
46656492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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