View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_high_11 (Length: 437)
Name: NF16825_high_11
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 33792466 - 33792843
Alignment:
| Q |
1 |
tatatttgaacccatattgtttttccaacaccttaagccacaaagtttgctatgaacccctagaattattgatatcctattttcatttaggagttattga |
100 |
Q |
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| T |
33792466 |
tatatttgaacccatattgtttttccaacaccttaagccacaaagtttgctatgaacccctagaattattgacatcctattttcatttaggagttattga |
33792565 |
T |
|
| Q |
101 |
caaattctattaagattgactatcatatatcatctcnnnnnnntctagactattttcatgttttgaaaattttgtccaatattatgtgtctgacaccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
33792566 |
caaattctattaagattgactatcatatatcatctcaaaaaaatctagattattttcatgttttgaaaattttgtccaatcttatgcgtctgacaccaac |
33792665 |
T |
|
| Q |
201 |
cttcatctttcagtccatcggttgatgtctatgagcataaaactatagtcatatggttatcgatctaatcctatttgctagtatcaagttttttctttcg |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33792666 |
cttcatctttcagtccatcagttgatgtctatgagcataaaactatagtcatatggttatcgatctaatcctatttgctagtatcaagttttttctttcg |
33792765 |
T |
|
| Q |
301 |
gtacattgcctatttagtattagataattataaagaatgataaaattgaattataaggttttgagattccacttcttc |
378 |
Q |
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||||||| ||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
33792766 |
gtacatttcctatttaggataagataattataaagaatgatacaattgaatcataaggttttgagattccacttcttc |
33792843 |
T |
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