View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_high_15 (Length: 326)
Name: NF16825_high_15
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 86 - 310
Target Start/End: Original strand, 36288178 - 36288402
Alignment:
| Q |
86 |
gcatgcagcaaactttatcacacagaaccaaactatcaaagatggttccactttggtctcagaaggtctcagatttgaaatgggtttcttcagttttaac |
185 |
Q |
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| T |
36288178 |
gcatgcagcaaactttatcacacagaaccaaactatcaaagatggttccactttggtctcagaaggtctcagatttgaaatgggtttcttcagttttaac |
36288277 |
T |
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| Q |
186 |
aactcttcttcaagatacgttggaatttggtattacaacgttacttcagcgtatgtttgggttgcaaatagagaaaaaccaataaaaaacagagaaggtt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36288278 |
aactcttcttcaagatacgttggaatttggtattacaacgttacttcagcgtatgtttgggttgcaaatagagaaaaaccaatcaaaaacagagaaggtt |
36288377 |
T |
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| Q |
286 |
ttatcacaataaaaaatgatggtaa |
310 |
Q |
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||||||||||||||||||||||||| |
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| T |
36288378 |
ttatcacaataaaaaatgatggtaa |
36288402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 86 - 310
Target Start/End: Complemental strand, 12097396 - 12097171
Alignment:
| Q |
86 |
gcatgcagcaaactttatcacacagaaccaaactatcaaagatggttccactttggtctcagaaggtctcagatttgaaatgggtttcttcagttttaac |
185 |
Q |
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||||||| |||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12097396 |
gcatgcaacaaactctatcacgcagaatcaaactatcaaagatagttccactttggtctcagaaggtctcaaatttgaaatgggtttcttcagttttaac |
12097297 |
T |
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| Q |
186 |
aactcttcttcaagatacgttggaatttggtattacaacgttacttcagcgtatgtttgggttgcaaatagagaaaaaccaataaaaaacagagaaggtt |
285 |
Q |
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|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
12097296 |
aattcatcttcaagatacgttggaatttggtactacaacgttacttcagcgtatgtttgggttgcaaacagagaaaaaccaatcaaaaacagagaaggtt |
12097197 |
T |
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| Q |
286 |
ttatcacaataa-aaaatgatggtaa |
310 |
Q |
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||| ||||||| ||||||||||||| |
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| T |
12097196 |
ctattacaataaaaaaatgatggtaa |
12097171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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