View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16825_high_2 (Length: 778)

Name: NF16825_high_2
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16825_high_2
NF16825_high_2
[»] chr3 (1 HSPs)
chr3 (18-770)||(55328912-55329678)


Alignment Details
Target: chr3 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 18 - 770
Target Start/End: Original strand, 55328912 - 55329678
Alignment:
Q  18 aacaagtcttatgttcttgtataataaattttgttttacagttgattgagaagggaggnnnnnnnnnnnn--------aaccctaaaagcattgaaggtt 109  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||    
T  55328912 aacaagttttatgttcctgtataataaattttgttttacagttgattgagaagggagggagagagagagagagagagaaaccctaaaagcattgaaggtt 55329011  T
Q  110 ttgaattggaattggaatcaatcgagaagaagcatgacgattcattctgtagtgatacagaagcttcttagcacaaatgcacacattggtcgtcaagtcg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55329012 ttgaattggaattggaatcaatcgagaagaagcatgacgattcattctgtagtgatacagaagcttcttagcacaaatgcacacattggtcgtcaagtcg 55329111  T
Q  210 ccactcatcatttcaaagattacacttacggccttcgcaacagaatggcaatcatcgattccgataagactttgatttgtatgcgaagtgctatcaattt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55329112 ccactcatcatttcaaagattacacttacggccttcgcaacagaatggcaatcatcgattccgataagactttgatttgtatgcgaagtgctatcaattt 55329211  T
Q  310 catctcttcccttgctcgccataatggtcgattcatgttcatcaacaccaatcctctcttcgatgaaatcttcgaacttatgtccaaaaaggttggatgc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55329212 catctcttcccttgctcgccataatggtcgattcatgttcatcaacaccaatcctctcttcgatgaaatcttcgaacttatgtccaaaaaggttggatgc 55329311  T
Q  410 tacagtccctcttccaattctctctggcgtactggtggatttctcaccaacagcaacagtcccaagaagtttcgatctcgcaacaagaaactttgcttcg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55329312 tacagtccctcttccaattctctctggcgtactggtggatttctcaccaacagcaacagtcccaagaagtttcgatctcgcaacaagaaactttgcttcg 55329411  T
Q  510 gtcccactcagcctcccgattgcatcgtcattgtcgataccgagagcaagtcttctgttattgacgaggctttcaaacttcacattccaattgtcgctct 609  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55329412 gtcccactcagcctcccgattgcatcgtcattgtcgatactgagagcaagtcttctgttattgacgaggctttcaaacttcacattccaattgtcgctct 55329511  T
Q  610 tgttgattctgctatgcctctccatactttcagccgcattgcttatcccattcccgttaacccctctgttcaatttgtctatcttttctgtaatttgatt 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55329512 tgttgattctgctatgcctctccatactttcagccgcattgcttatcccattcccgttaacccctctgttcaatttgtctatcttttctgtaatttgatt 55329611  T
Q  710 accaaaacactgcttctcgagaag------aagaacaacaactctaatatcaaacttcttgatgatg 770  Q
    ||||||||||||||||||||||||      || ||||||||||||||||||||||||||||||||||    
T  55329612 accaaaacactgcttctcgagaagaacaacaacaacaacaactctaatatcaaacttcttgatgatg 55329678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University