View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16825_high_21 (Length: 223)
Name: NF16825_high_21
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 40011862 - 40011675
Alignment:
| Q |
19 |
acaagaaacctcacaacctgaacctcacttcgcttactcgtctttttccttttcccattgttattttcatcgaaccaaacctcgttaatttcaatatcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40011862 |
acaagaaacctcacaacctgaacctcacttcgcttactcgtctttttccttttcccattgttattttcatcgaaccaaacctcgttaatttcaatatcat |
40011763 |
T |
|
| Q |
119 |
cctcaaaaacccatttcaattcatccatttttctctcacgaaacatttccttcaactcaatcaaactctccctcttaagtttgtctcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40011762 |
cctcaaaaacccatttcaattcatccatttttctctcacgaaacatttccttcaactcaatcaaactctccctcttaagtttctctcc |
40011675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University