View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_high_4 (Length: 586)
Name: NF16825_high_4
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 41314299 - 41313713
Alignment:
| Q |
1 |
gtttttcagcgaactaaatagctatttataagaagttctataaatcaacaacaataataaaaatttgagatgagatcactaacctttagagaactggaga |
100 |
Q |
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| T |
41314299 |
gtttttcagcgaactaaatagctatttataagaagttctataaatcaacaacaataataaaaatttgagatgagatcactaacctttagagaactggagg |
41314200 |
T |
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| Q |
101 |
taaaaaa-tgatatcgtttgatagtaagcaaaagtgaaaacgcttggagaagtttgccgccaagaaagctgcaagtaatgaagcttattaattgatactc |
199 |
Q |
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| T |
41314199 |
taaaaaaatgatatcgtttgatagtaagcaaaagtgaaaacgcttggaggagtttgccgccaagaaagctgcaagtaatgaagcttattaattgatactc |
41314100 |
T |
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| Q |
200 |
tattgataaggtatttgttttagatgcaaaccactaacacatttctccaacattaatagtgctgctgaatagatactggaataaaaacagagcaaacgag |
299 |
Q |
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| T |
41314099 |
tattgataaggtgtttgttttagatgcaaaccactaacacatttctccaacattaatagtgctgctgaatagatactggaataaaaacagagcaaacgag |
41314000 |
T |
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| Q |
300 |
acatcctaaatgctaaatagtagtccagaaggcagaataacagtatcatatttactaagtagtaaatttaatcagattaagtagtttgtttgcaggtctc |
399 |
Q |
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| T |
41313999 |
acatcctaaatgctaaatagtagtccagaaggcagaataacagtatcatatttactaagtagtaaatttaatcagattaagtagtttgttttcaggtctc |
41313900 |
T |
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| Q |
400 |
ttttccaatatatatccacacaaactctgactttgccccgcatagcactcacatggagtgacgaaatcatttcttgacacattcaagcgaacacgtagtt |
499 |
Q |
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| T |
41313899 |
ttttccaatatatatccacacaaactctgactttgccccgcatagcactcacatggagtgacgaaatcatttcttgacacattcaagtgaacacgtagtt |
41313800 |
T |
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| Q |
500 |
agtgttatccagcagggtctgaaacaacttaagttgcaaacactaagatataagtatcaaagaggggttatgttattctattgattg |
586 |
Q |
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| T |
41313799 |
agcgttatccagcagggtctgaaacaacttaagttgcaaacactaagatataagtatcaaagaggggttatgttattctattgattg |
41313713 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 38916716 - 38916763
Alignment:
| Q |
137 |
aaacgcttggagaagtttgccgccaagaaagctgcaagtaatgaagct |
184 |
Q |
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| T |
38916716 |
aaacgcttggaggaggttgccgcaaagaaagctgcaagtaacgaagct |
38916763 |
T |
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