View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_10 (Length: 455)
Name: NF16825_low_10
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 29924454 - 29924028
Alignment:
| Q |
8 |
ccaagaatataagaaattgtatagcaataatgnnnnnnnncttcaagtttttagtcatgtttataattgattgagacgaaaaacttttagcctacttttg |
107 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29924454 |
ccaaaaatgtaagaaattgtatagcaataatgttttt----ttcaagtttttagtcatgtttatacttgattgagacgaaaaacttttagcctacttttg |
29924359 |
T |
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| Q |
108 |
atgtaacttcttaatcaaaaacttaggtatgagttatatgatgtacaagtccaaaaaatgctcaccgttcaaaacttgacatgcacatatggggccatgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924358 |
atgtaacttcttaatcaaaaacttaggtatgagt-atatgatgtacaagtccaaaaaatgctcaccgttcaaaacttgacatgcacatatggggccatgg |
29924260 |
T |
|
| Q |
208 |
aaaggcatcggtgaaacacatgcagacccaaaataatgacaaacgttgaatgaacgcggagagaagtgatcgaaatagaaatagaacatgtagaaaaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924259 |
aaaggcatcggtgaaacacatgcagacccaaaataatgacaaacgttgaatgaacgcgaagagaagtgatcgaaatagaaatagaacatgtagaaaaaga |
29924160 |
T |
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| Q |
308 |
aagggatattgctaccatgtgtaatgactcataacatgtgtgatagatttggtcaagaggaggtgttgttagataccggacccgcgatcatgacaatgct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29924159 |
aagggatattgctaccatgtgtaatgactcataacatgtgtgatagatttggtcaagaggaggtgttgttagataccggacccgcgatcatgacaatgcc |
29924060 |
T |
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| Q |
408 |
gaagtgaagggtttacattactatctagtaac |
439 |
Q |
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|||| ||||| |||||||||||||||||||| |
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| T |
29924059 |
caagtaaagggcttacattactatctagtaac |
29924028 |
T |
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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 10169556 - 10169476
Alignment:
| Q |
348 |
tgatagatttggtcaagaggaggtgttgttagataccggacccgcgatcatgacaatgctgaagtgaagggtttacattac |
428 |
Q |
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| T |
10169556 |
tgatagctttgggcaagaggaggtgttgttagataccggacccgctatcatgacgatgctaaagtgaaggcattacattac |
10169476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 1981896 - 1981811
Alignment:
| Q |
347 |
gtgatagatttggtcaagaggaggtgttgttagataccggacccgcgatcatgacaatgctgaagtgaagggtttacattactatc |
432 |
Q |
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| T |
1981896 |
gtgatagctttggtcaagaggagacattgttagacactggacccgcgatcatgacgatgctaaagttaagggattacgttactatc |
1981811 |
T |
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