View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16825_low_12 (Length: 426)

Name: NF16825_low_12
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16825_low_12
NF16825_low_12
[»] chr6 (11 HSPs)
chr6 (18-416)||(14858615-14859013)
chr6 (21-368)||(14860647-14860988)
chr6 (174-368)||(18676864-18677058)
chr6 (21-182)||(18675867-18676028)
chr6 (72-171)||(24172906-24173006)
chr6 (123-205)||(32983725-32983807)
chr6 (375-411)||(12352298-12352334)
chr6 (116-175)||(24557383-24557442)
chr6 (373-404)||(18677330-18677361)
chr6 (373-407)||(14861152-14861186)
chr6 (109-145)||(12351545-12351581)
[»] chr3 (8 HSPs)
chr3 (23-368)||(39924808-39925153)
chr3 (21-242)||(5027635-5027855)
chr3 (24-242)||(3276770-3276989)
chr3 (24-242)||(3273360-3273579)
chr3 (116-193)||(14308930-14309008)
chr3 (375-411)||(39925386-39925422)
chr3 (375-407)||(3274015-3274047)
chr3 (375-407)||(3277425-3277457)
[»] chr5 (4 HSPs)
chr5 (27-368)||(14405182-14405523)
chr5 (23-243)||(40667153-40667375)
chr5 (375-411)||(14404913-14404949)
chr5 (111-150)||(18924832-18924871)
[»] scaffold0882 (1 HSPs)
scaffold0882 (21-342)||(893-1206)
[»] scaffold0766 (1 HSPs)
scaffold0766 (21-342)||(2197-2510)
[»] scaffold0031 (1 HSPs)
scaffold0031 (21-328)||(89769-90081)
[»] scaffold0303 (1 HSPs)
scaffold0303 (21-242)||(20450-20670)
[»] chr1 (3 HSPs)
chr1 (24-242)||(16850522-16850741)
chr1 (23-192)||(21197579-21197747)
chr1 (373-411)||(21198209-21198247)
[»] scaffold0047 (1 HSPs)
scaffold0047 (23-222)||(8366-8566)
[»] chr8 (3 HSPs)
chr8 (24-242)||(39037657-39037876)
chr8 (109-222)||(37785822-37785935)
chr8 (375-407)||(39038309-39038341)
[»] scaffold0004 (2 HSPs)
scaffold0004 (22-183)||(113542-113701)
scaffold0004 (23-222)||(354488-354688)
[»] scaffold0097 (1 HSPs)
scaffold0097 (109-248)||(31847-31986)
[»] chr2 (6 HSPs)
chr2 (109-248)||(20728018-20728157)
chr2 (46-145)||(2997098-2997197)
chr2 (181-242)||(24779619-24779680)
chr2 (109-159)||(4183083-4183133)
chr2 (373-409)||(24779961-24779997)
chr2 (110-150)||(24779570-24779610)
[»] chr7 (5 HSPs)
chr7 (102-222)||(18069888-18070008)
chr7 (24-205)||(8595388-8595565)
chr7 (123-205)||(8826297-8826379)
chr7 (23-62)||(18070075-18070114)
chr7 (109-142)||(15889741-15889774)
[»] scaffold1744 (1 HSPs)
scaffold1744 (108-183)||(1098-1172)
[»] chr4 (1 HSPs)
chr4 (46-145)||(17983354-17983453)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 14858615 - 14859013
Alignment:
Q  18 gatacgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14858615 gatacgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttctttatattaggactttattgtaagtggttaaaaagctc 14858714  T
Q  118 tcataaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgca 217  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14858715 tcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgca 14858814  T
Q  218 taattgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcatta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14858815 taattgattttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcatta 14858914  T
Q  318 cataattgattatgtgattctcaaattggcctaattatttcaatgctatatgtattcatatttgcactaaacattgtcaaaaatatttttcatctcact 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14858915 cataattgattatgtgattctcaaattggcctaattatttcaatgctatatgtattcatatttgcactaaacattgtcaaaaatatttttcatcacact 14859013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 14860647 - 14860988
Alignment:
Q  21 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctca 120  Q
    |||| |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860647 acgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagt------ttttttgtttatattaggactttattgtaagtggttaaaaagctctca 14860740  T
Q  121 taaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataa 220  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860741 tgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataa 14860840  T
Q  221 ttgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacat 320  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860841 ttggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacat 14860940  T
Q  321 aattgattatgtgattctcaaattggcctaattatttcaatgctatat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860941 aattgattatgtgattctcaaattggcctaattatttcaatgctatat 14860988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 174 - 368
Target Start/End: Original strand, 18676864 - 18677058
Alignment:
Q  174 aaatatttttacatgaaaagtcataatttattttacaaattgcataattgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  18676864 aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatattaatcatttcgtaaat 18676963  T
Q  274 caaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatat 368  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18676964 caaaatatcatggctttgacttttgcatgcaaatattttcattacataattgattatgtgattttcaaattggcctaattatttcaatgctatat 18677058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 18675867 - 18676028
Alignment:
Q  21 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctca 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18675867 acgatgcaaaaagcggaaaagaaattcaagctatcaaatcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctca 18675966  T
Q  121 taaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttt 182  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18675967 tgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttt 18676028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 24172906 - 24173006
Alignment:
Q  72 gttttttgtttatattaggactttattgtaagtggtt-aaaaagctctcataaaaataaatcacacactcacaataattttcatctaaagtaattttaca 170  Q
    ||||||| ||| |||||| |||||  ||||| | ||| |||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  24172906 gttttttatttgtattagaacttttatgtaattagttgaaaaaattctcattaaaataaatcacacactcacaataattttcatctcaagtaattttaca 24173005  T
Q  171 t 171  Q
    |    
T  24173006 t 24173006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 32983725 - 32983807
Alignment:
Q  123 aaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt 205  Q
    |||| |||||||||||||||| | |||||||| || ||| ||||||||| ||| ||||||| ||||||||  |||||||||||    
T  32983725 aaaagaaatcacacactcacattgattttcatatatagtgattttacattaaattatttttccatgaaaacccataatttatt 32983807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 12352298 - 12352334
Alignment:
Q  375 atatttgcactaaacattgtcaaaaatatttttcatc 411  Q
    |||||||||||||||||||||||||||||||||||||    
T  12352298 atatttgcactaaacattgtcaaaaatatttttcatc 12352334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 24557442 - 24557383
Alignment:
Q  116 tctcataaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaa 175  Q
    |||||| ||||||||||||||||||||| | |||||||  || |||||||||||||||||    
T  24557442 tctcattaaaataaatcacacactcacattgattttcacatatagtaattttacatgaaa 24557383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 404
Target Start/End: Original strand, 18677330 - 18677361
Alignment:
Q  373 tcatatttgcactaaacattgtcaaaaatatt 404  Q
    ||||||||||||||||||||||||||||||||    
T  18677330 tcatatttgcactaaacattgtcaaaaatatt 18677361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 14861152 - 14861186
Alignment:
Q  373 tcatatttgcactaaacattgtcaaaaatattttt 407  Q
    |||||||||||||||||||| ||||||||||||||    
T  14861152 tcatatttgcactaaacattatcaaaaatattttt 14861186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 12351545 - 12351581
Alignment:
Q  109 aaaaagctctcataaaaataaatcacacactcacaat 145  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  12351545 aaaaagctctcatgaaaataaatcacacattcacaat 12351581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 23 - 368
Target Start/End: Original strand, 39924808 - 39925153
Alignment:
Q  23 gatgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtt-aaaaagctctca 120  Q
    ||||||||||||||||||||| ||||||||| ||||||||||  | || |   |||| ||| | ||||||||   ||||| || ||  |||||| |||||    
T  39924808 gatgcaaaaagcggaaaagaagattcaagctttcaagtcttggattttaa---ttttatttgttttaggactgatttgtacgtagtagaaaaagttctca 39924904  T
Q  121 taaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcata 219  Q
    | |||||||||||||||||||||||  ||||||| || | || ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  39924905 ttaaaataaatcacacactcacaatggttttcatttatatgtgattttacataaaattatttttacataaaaagtcataatttattttacaaattgcata 39925004  T
Q  220 attgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattaca 319  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39925005 attggttttgacattgaaaatatatttgagcttgattttaattattacgtaaatcaaattatcatggctttgacttttgcatacaaatattttcattaca 39925104  T
Q  320 taattgattatgtgattctcaaattggcctaattatttcaatgctatat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39925105 taattgattatgtgattctcaaattggcctaattatttcaatgctatat 39925153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 5027855 - 5027635
Alignment:
Q  21 acgatgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtta-aaaagctct 118  Q
    ||||||||||||||||||||||| ||||||||| || |||||||| | || |   |||| ||| |||||||||||||| |||||| ||   |||||||||    
T  5027855 acgatgcaaaaagcggaaaagaatattcaagctttctagtcttgaattttaa---ttttatttgtattaggactttat-gtaagtagtaccaaaagctct 5027760  T
Q  119 cataaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgca 217  Q
    ||| ||||||||||||||||||||||| |||||||| |||| || ||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  5027759 catgaaaataaatcacacactcacaatgattttcatttaaatgtgattttgcattaaaatatttttacatgaaaacttataatttattttacaaattgca 5027660  T
Q  218 taattgattttgacattgaaaatat 242  Q
    |||||  |||||||||| |||||||    
T  5027659 taattctttttgacattaaaaatat 5027635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 3276770 - 3276989
Alignment:
Q  24 atgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaa-gctctcata 122  Q
    ||||||||||||||||||||||||||| |||||||||||| || ||    ||||| | | | |||||||||||||||||||||||||||| |||||||      
T  3276770 atgcaaaaagcggaaaagaaattcaagttatcaagtcttgggtttta---tttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaag 3276866  T
Q  123 aaaataaatcacacactcacaataattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttattttacaaattgcata 219  Q
    ||||||||||| ||||||||| | |||||||| ||||  ||||||  |||||||| |||||| ||||||| ||| || ||||||||||  ||||||||||    
T  3276867 aaaataaatcatacactcacagtgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttattttgaaaattgcata 3276966  T
Q  220 attgattttgacattgaaaatat 242  Q
    |||| |||||||||| |||||||    
T  3276967 attggttttgacattaaaaatat 3276989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 3273360 - 3273579
Alignment:
Q  24 atgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaa-gctctcata 122  Q
    |||||||||| |||||||||||||||| |||||||||||| || ||    ||||| | | | |||||||||||||||||||||||||||| |||||||      
T  3273360 atgcaaaaagaggaaaagaaattcaagttatcaagtcttgggtttta---tttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaag 3273456  T
Q  123 aaaataaatcacacactcacaataattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttattttacaaattgcata 219  Q
    ||||||||||| ||||||||| | |||||||| ||||  ||||||  |||||||| |||||| ||||||| ||| || ||||||||||  ||||||||||    
T  3273457 aaaataaatcatacactcacagtgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttattttgaaaattgcata 3273556  T
Q  220 attgattttgacattgaaaatat 242  Q
    |||| |||||||||| |||||||    
T  3273557 attggttttgacattaaaaatat 3273579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 14309008 - 14308930
Alignment:
Q  116 tctcataaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaag 193  Q
    |||||| ||||||||||||||||||||||| ||| |||| |||| || ||||||||| ||||||||||| |||||||||    
T  14309008 tctcatgaaaataaatcacacactcacaatgattatcatttaaatgtgattttacattaaaatatttttgcatgaaaag 14308930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 39925386 - 39925422
Alignment:
Q  375 atatttgcactaaacattgtcaaaaatatttttcatc 411  Q
    |||||||||||||||||||||||||||||||||||||    
T  39925386 atatttgcactaaacattgtcaaaaatatttttcatc 39925422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 3274015 - 3274047
Alignment:
Q  375 atatttgcactaaacattgtcaaaaatattttt 407  Q
    |||||||||||||||||||||||||||| ||||    
T  3274015 atatttgcactaaacattgtcaaaaatactttt 3274047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 3277425 - 3277457
Alignment:
Q  375 atatttgcactaaacattgtcaaaaatattttt 407  Q
    |||||||||||||||||||||||||||| ||||    
T  3277425 atatttgcactaaacattgtcaaaaatactttt 3277457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 27 - 368
Target Start/End: Complemental strand, 14405523 - 14405182
Alignment:
Q  27 caaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtt-aaaaagctctcataaa 124  Q
    ||||||||||||||||| ||||||||| ||||||||||  | || |   |||| ||| | ||||||||   |||||||| ||  |||||| |||||| ||    
T  14405523 caaaaagcggaaaagaagattcaagctttcaagtcttggattttaa---ttttatttgttttaggactgatttgtaagtagtagaaaaagttctcattaa 14405427  T
Q  125 aataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattg 223  Q
    |||||||||||||||||||||  ||||||| || | || ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  14405426 aataaatcacacactcacaatggttttcatttatatgtgattttacataaaattatttttacataaaaagtcataatttattttacaaattgtataattg 14405327  T
Q  224 attttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataat 323  Q
     ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14405326 gttttgacattgaaaatatatttgagcttgattttaattattacgtaaatcaaattatcatggctttgacttttgcatacaaatattttcattacataat 14405227  T
Q  324 tgattatgtgattctcaaattggcctaattatttcaatgctatat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14405226 tgattatgtgattctcaaattggcctaattatttcaatgctatat 14405182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 40667375 - 40667153
Alignment:
Q  23 gatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttg-tttatattaggactttattgtaagtggttaaaaagctctcat 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||      
T  40667375 gatgcaaaaagtggaaaagaaattcaagctatcaagtcttgagtcttgagtttttttatttatattaggactttattataagtggataaaaagctctcga 40667276  T
Q  122 aaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataa 220  Q
     |||||||||||||||||||||||||||||||| |||| || ||||| ||| ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  40667275 gaaaataaatcacacactcacaataattttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataa 40667176  T
Q  221 ttgattttgacattgaaaatata 243  Q
    |||||||||||||| ||||||||    
T  40667175 ttgattttgacattaaaaatata 40667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 14404949 - 14404913
Alignment:
Q  375 atatttgcactaaacattgtcaaaaatatttttcatc 411  Q
    |||||||||||||||||||||||||||||||||||||    
T  14404949 atatttgcactaaacattgtcaaaaatatttttcatc 14404913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 18924832 - 18924871
Alignment:
Q  111 aaagctctcataaaaataaatcacacactcacaataattt 150  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  18924832 aaagctctcataaaaataaatcacacaatcacaataattt 18924871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 1206 - 893
Alignment:
Q  21 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1206 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgtgtcttgagttttttgtttatattagaactttattgtaagtggttaaaaagctctca 1107  T
Q  121 taaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcata 219  Q
     ||||||||||||||||||||||||  ||||||| |||| || ||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1106 aaaaaataaatcacacactcacaatggttttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcata 1007  T
Q  220 attgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattaca 319  Q
    |||| |||||||||| ||||| |||||| || |||| | ||||||        |||||||| ||||| ||| |||||||||||  |||||||||||||||    
T  1006 attggttttgacattaaaaatttatttgtgcatgatttgaattat--------tcaaattaccatggctttaacttttgcata-taatattttcattaca 916  T
Q  320 taattgattatgtgattctcaaa 342  Q
    | |||||||| ||| ||||||||    
T  915 tgattgattacgtggttctcaaa 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 21 - 342
Target Start/End: Original strand, 2197 - 2510
Alignment:
Q  21 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2197 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgtgtcttgagttttttgtttatattagaactttattgtaagtggttaaaaagctctca 2296  T
Q  121 taaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcata 219  Q
     ||||||||||||||||||||||||  ||||||| |||| || ||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2297 aaaaaataaatcacacactcacaatggttttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcata 2396  T
Q  220 attgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattaca 319  Q
    |||| |||||||||| ||||| |||||| || |||| | ||||||        |||||||| ||||| ||| |||||||||||  |||||||||||||||    
T  2397 attggttttgacattaaaaatttatttgtgcatgatttgaattat--------tcaaattaccatggctttaacttttgcata-taatattttcattaca 2487  T
Q  320 taattgattatgtgattctcaaa 342  Q
    | |||||||| ||| ||||||||    
T  2488 tgattgattacgtggttctcaaa 2510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 90081 - 89769
Alignment:
Q  21 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatat---taggactttattgtaagtggttaaaaagctc 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  90081 acgatgcaaaaagcggaaaagaaattcaaactatcaagtcttgagtgttgagttttttgtttatattagtaggactttattgtaagtggttaaaaagctc 89982  T
Q  118 tcataaaaataaatcacacactcacaataattt--tcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattg 215  Q
    |||  |||||||||||||||||||||||  |||  | || | |||| ||||||||||||||||||||| ||||||| ||||||||||||||   ||| ||    
T  89981 tcaagaaaataaatcacacactcacaatgtttttattatatgaagtgattttacatgaaaatatttttgcatgaaaggtcataatttatttccaaaactg 89882  T
Q  216 cataattgattttgacattgaaaatatatttgagcttgatgttaattatttcgtaaatcaaattatcatggttttgac-ttttgcatacaaatattttca 314  Q
    ||||||||||||||||||| ||||||||||||||   ||| |  |||  ||| |||||||||| | ||||| |||||| ||||||||| |||||||||||    
T  89881 cataattgattttgacattaaaaatatatttgagtaagatttggatttattcataaatcaaatgaccatggatttgactttttgcata-aaatattttca 89783  T
Q  315 ttacataattgatt 328  Q
    ||||||||||||||    
T  89782 ttacataattgatt 89769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 20450 - 20670
Alignment:
Q  21 acgatgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtta-aaaagctct 118  Q
    ||||||||||||||||||||||| ||||||||| || |||||||| | || |   |||| ||| |||||||||||||| |||||| ||   |||||||||    
T  20450 acgatgcaaaaagcggaaaagaatattcaagctttctagtcttgaattttaa---ttttatttgtattaggactttat-gtaagtagtaccaaaagctct 20545  T
Q  119 cataaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgca 217  Q
    ||| ||||||||||||||||||||||| |||||||| |||| || |||||  || |||||||||||||||||||| | ||||||||||||||||||||||    
T  20546 catgaaaataaatcacacactcacaatgattttcatttaaatgtgattttgaattaaaatatttttacatgaaaaattataatttattttacaaattgca 20645  T
Q  218 taattgattttgacattgaaaatat 242  Q
    |||||  |||||||||| |||||||    
T  20646 taattctttttgacattaaaaatat 20670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 16850522 - 16850741
Alignment:
Q  24 atgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaa-gctctcata 122  Q
    ||||||||||||||||||||||||||| |||||||||||| || ||    ||||| | | | |||||||||||||||||||||||||||| |||||||      
T  16850522 atgcaaaaagcggaaaagaaattcaagttatcaagtcttgggtttta---tttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaag 16850618  T
Q  123 aaaataaatcacacactcacaataattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttattttacaaattgcata 219  Q
    ||||||||||| |||||| || | |||||||| ||||  ||||||  |||||||| |||||| ||||||| ||| || ||||||||||  ||||||||||    
T  16850619 aaaataaatcatacactcccagtgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttattttgaaaattgcata 16850718  T
Q  220 attgattttgacattgaaaatat 242  Q
    |||| |||||||||| |||||||    
T  16850719 attggttttgacattaaaaatat 16850741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 21197579 - 21197747
Alignment:
Q  23 gatgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaagctctcat 121  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||  | ||    ||||| ||||||||| || ||||||||||||||||||||| ||||||     
T  21197579 gatgcaaaaagcggaaaagaatattcaagctttcttgtcttggatttta---tttttatttatattacgaatttattgtaagtggttaaaaatctctcaa 21197675  T
Q  122 aaaaataaatcacacactcacaataattttc-atctaaagtaattttacatgaaaatatttttacatgaaaa 192  Q
     |||||||||||||||||||||||| | ||| | | || || ||||| ||| ||||||||||| ||||||||    
T  21197676 gaaaataaatcacacactcacaatattcttcaaacaaatgtgattttgcattaaaatatttttgcatgaaaa 21197747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 21198209 - 21198247
Alignment:
Q  373 tcatatttgcactaaacattgtcaaaaatatttttcatc 411  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  21198209 tcatatttgcactaaacattgtgaaaaatatttttcatc 21198247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 8366 - 8566
Alignment:
Q  23 gatgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtt-aaaaagctctca 120  Q
    |||||||||||| |||||||| ||||||||| ||||||||||  | || |  ||||| ||| | ||||||||||  ||||||| ||  ||||||||||||    
T  8366 gatgcaaaaagccgaaaagaagattcaagctttcaagtcttggattttaa--tttttatttgttttaggacttttatgtaagtagtagaaaaagctctca 8463  T
Q  121 t-aaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcata 219  Q
    | ||||||| ||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||| ||||||||| ||||||| ||| |  ||||||||||    
T  8464 ttaaaaatatatcacacactcacaatgtttttcatataaagtgattttacataaaaatatttttgcatgaaaagccataattaattatgtaaattgcata 8563  T
Q  220 att 222  Q
    |||    
T  8564 att 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 39037657 - 39037876
Alignment:
Q  24 atgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggttaaaaa---gctctca 120  Q
    ||||||||||||||||||||||||||| ||||||||||||  | || | |||| ||| |    |||||||||||| ||||||||||||||   |||||||    
T  39037657 atgcaaaaagcggaaaagaaattcaagttatcaagtcttggatttt-atttttatgtgt----taggactttattttaagtggttaaaaaaaagctctca 39037751  T
Q  121 taaaaataaatcacacactcacaataattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttattttacaaattgca 217  Q
      ||||||||||| ||||||||||| |||||||| ||||  ||||||  |||||||| |||||| ||||||| ||| || ||||||||||  |||| |||    
T  39037752 agaaaataaatcatacactcacaatgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttattttgaaaatggca 39037851  T
Q  218 taattgattttgacattgaaaatat 242  Q
    |||||| |||||||||| |||||||    
T  39037852 taattggttttgacattaaaaatat 39037876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 37785822 - 37785935
Alignment:
Q  109 aaaaagctctcataaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcata-atttatttt 207  Q
    ||||| ||||||| |||||||||||||||| ||||||  ||||  || ||||| ||||||| |||||||||||||||| |||||  |||| ||||||  |    
T  37785822 aaaaaactctcattaaaataaatcacacacccacaatgttttttttc-aaagtgattttacgtgaaaatatttttacaggaaaaaccatatatttatcat 37785920  T
Q  208 acaaattgcataatt 222  Q
    | |||||||||||||    
T  37785921 agaaattgcataatt 37785935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 39038309 - 39038341
Alignment:
Q  375 atatttgcactaaacattgtcaaaaatattttt 407  Q
    |||||||||||||||||||||||||||| ||||    
T  39038309 atatttgcactaaacattgtcaaaaatactttt 39038341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 113701 - 113542
Alignment:
Q  22 cgatgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtt-aaaaagctctc 119  Q
    |||||||||||||||||||||| ||||||||| || |||||||  | ||    ||||| |||||||||||||||||| |||||| ||  |||||||||||    
T  113701 cgatgcaaaaagcggaaaagaagattcaagctttctagtcttggatttta---tttttatttatattaggactttat-gtaagtagtagaaaaagctctc 113606  T
Q  120 ataaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatattttt 183  Q
    || |||||||||||| || ||||||||||||||||||||  | ||||| ||||||| |||||||    
T  113605 atgaaaataaatcacgcagtcacaataattttcatctaacatgattttgcatgaaattattttt 113542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 354688 - 354488
Alignment:
Q  23 gatgcaaaaagcggaaaagaa-attcaagctatcaagtctt-gagtcttgagttttttgtttatattaggactttattgtaagtggtt-aaaaagctctc 119  Q
    ||||||||||||||||||||| ||||||||| ||||||||| || |||     ||||| ||| | ||||||||||  ||||||| ||  |||||||||||    
T  354688 gatgcaaaaagcggaaaagaagattcaagctttcaagtcttagattctaa---tttttatttgttttaggacttttatgtaagtagtagaaaaagctctc 354592  T
Q  120 at-aaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcat 218  Q
     | ||||||| ||||||||||||||||  ||||||| |||||| ||||||||| ||||||||||| |||  |||| ||||||  ||| |  |||||||||    
T  354591 gttaaaaatatatcacacactcacaatgtttttcatataaagtgattttacataaaaatatttttgcatataaagccataatcaattatgtaaattgcat 354492  T
Q  219 aatt 222  Q
    ||||    
T  354491 aatt 354488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 31986 - 31847
Alignment:
Q  109 aaaaagctctcataaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatttt 207  Q
    ||||||||||||| |||||| |||||||||||||| | ||||| || |||| |||||||| ||||||||| ||||| ||||||||   | |||| |||||    
T  31986 aaaaagctctcatgaaaatacatcacacactcacattgatttttatttaaaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgatttt 31887  T
Q  208 acaaattgcataattgattttgacattgaaaatatatttga 248  Q
    | |||||| ||||||| |||||||||| |||||||||||||    
T  31886 agaaattgtataattg-ttttgacattaaaaatatatttga 31847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 20728157 - 20728018
Alignment:
Q  109 aaaaagctctcataaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatttt 207  Q
    ||||||||||||| |||||| |||||||||||||| | ||||| || |||| |||||||| ||||||||| ||||| ||||||||   | |||| |||||    
T  20728157 aaaaagctctcatgaaaatacatcacacactcacattgatttttatttaaaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgatttt 20728058  T
Q  208 acaaattgcataattgattttgacattgaaaatatatttga 248  Q
    | |||||| ||||||| |||||||||| |||||||||||||    
T  20728057 agaaattgtataattg-ttttgacattaaaaatatatttga 20728018  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 2997197 - 2997098
Alignment:
Q  46 tcaagctatcaagtcttgagtcttgagttttt--tgtttatattaggactttattgtaagtggttaaaaagctctcataaaaataaatcacacactcaca 143  Q
    |||||||||||| | || ||||||||||||||  | ||| ||||||||| || ||||||||||||||||  ||||||| ||||||||||||||||| |||    
T  2997197 tcaagctatcaactattaagtcttgagtttttattatttgtattaggacattgttgtaagtggttaaaa--ctctcatgaaaataaatcacacactaaca 2997100  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 24779619 - 24779680
Alignment:
Q  181 tttacatgaaaagtcataatttattttacaaattgcataattgattttgacattgaaaatat 242  Q
    |||||||||||| | |||||||||||||||||||||||||||  |||||||||| |||||||    
T  24779619 tttacatgaaaatttataatttattttacaaattgcataattatttttgacattaaaaatat 24779680  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 4183133 - 4183083
Alignment:
Q  109 aaaaagctctcataaaaataaatcacacactcacaataattttcatctaaa 159  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  4183133 aaaaagctctcttaaaaataaatcacacattcacaataattttcatttaaa 4183083  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 24779961 - 24779997
Alignment:
Q  373 tcatatttgcactaaacattgtcaaaaatatttttca 409  Q
    |||||||| ||||||||||||||||||||||||||||    
T  24779961 tcatatttacactaaacattgtcaaaaatatttttca 24779997  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 24779570 - 24779610
Alignment:
Q  110 aaaagctctcataaaaataaatcacacactcacaataattt 150  Q
    |||||||||||| |||||||||||||||||| |||| ||||    
T  24779570 aaaagctctcatgaaaataaatcacacactcgcaatgattt 24779610  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 18070008 - 18069888
Alignment:
Q  102 agtggttaaaaagctctcataaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataat 200  Q
    |||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||  | ||||| ||| ||||||||||| | ||||||| |||  |    
T  18070008 agtggttaaaaagctctcatgaaaataaatcacatactcacaatatttttcatataaacatgattttgcattaaaatattttt-cttgaaaagccatttt 18069910  T
Q  201 ttattttacaaattgcataatt 222  Q
    ||||| |  |||||||||||||    
T  18069909 ttattatgaaaattgcataatt 18069888  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 8595565 - 8595388
Alignment:
Q  24 atgcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagttttttgtttatattaggactttattgtaagtggtt-aaaaagctctcat 121  Q
    |||||||||||||||||||| ||||||||  ||||||||||  | ||    ||||| ||| | |||||||| | |||||||| ||  |||||||||||||    
T  8595565 atgcaaaaagcggaaaagaagattcaagccttcaagtcttggatttta---tttttatttgttttaggactat-ttgtaagtagtagaaaaagctctcat 8595470  T
Q  122 aaaaataaatcacacactcacaataattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatt 205  Q
     |||||||||||||||||||  ||  |||| || |||| || ||||| ||||||||||||||| ||||||||| |||||||||||    
T  8595469 taaaataaatcacacactca--atggtttttatttaaaagtgattttgcatgaaaatattttt-catgaaaagccataatttatt 8595388  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 8826297 - 8826379
Alignment:
Q  123 aaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt 205  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| | ||||| | ||||| ||||||||   ||||||||||    
T  8826297 aaaataaatcacaccgtcacaatgattttcatataaagtaatttttcttgaaactttttttgcatgaaaaactataatttatt 8826379  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 18070114 - 18070075
Alignment:
Q  23 gatgcaaaaagcggaaaagaaattcaagctatcaagtctt 62  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  18070114 gatgtaaaaggcggaaaagaaattcaagctatcaagtctt 18070075  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 15889741 - 15889774
Alignment:
Q  109 aaaaagctctcataaaaataaatcacacactcac 142  Q
    |||| |||||||||||||||||||||||||||||    
T  15889741 aaaatgctctcataaaaataaatcacacactcac 15889774  T

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Target: scaffold1744 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 1172 - 1098
Alignment:
Q  108 taaaaagctctcataaaaataaatcacacactcacaataattttcatctaaagtaattttacatgaaaatattttt 183  Q
    |||||||||||||| ||||||||||||||||||||||| || ||  || ||||| |||||||||||||||||||||    
T  1172 taaaaagctctcattaaaataaatcacacactcacaat-atctttttcgaaagtgattttacatgaaaatattttt 1098  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 17983453 - 17983354
Alignment:
Q  46 tcaagctatcaagtcttgagtcttgagttttt--tgtttatattaggactttattgtaagtggttaaaaagctctcataaaaataaatcacacactcaca 143  Q
    |||||||||||| | || ||||||||||||||  | ||| ||||||||| || ||||||||||||||||  ||||||| ||||||||||||||||| |||    
T  17983453 tcaagctatcaactattaagtcttgagtttttattatttgtattaggacattgttgtaagtggttaaaa--ctctcatgaaaataaatcacacactaaca 17983356  T

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