View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16825_low_14 (Length: 327)

Name: NF16825_low_14
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16825_low_14
NF16825_low_14
[»] chr7 (3 HSPs)
chr7 (20-317)||(41313445-41313742)
chr7 (178-262)||(27486113-27486197)
chr7 (24-133)||(37437698-37437808)
[»] chr6 (5 HSPs)
chr6 (24-165)||(535746-535888)
chr6 (22-107)||(29659178-29659263)
chr6 (65-126)||(27827316-27827377)
chr6 (65-126)||(27831894-27831955)
chr6 (60-133)||(19050732-19050804)
[»] chr1 (2 HSPs)
chr1 (26-126)||(25009315-25009416)
chr1 (65-107)||(32854598-32854640)
[»] chr8 (1 HSPs)
chr8 (24-107)||(14242739-14242823)
[»] chr4 (4 HSPs)
chr4 (54-94)||(16527779-16527819)
chr4 (28-107)||(24354222-24354302)
chr4 (173-258)||(21867824-21867909)
chr4 (173-258)||(21923685-21923770)
[»] chr5 (1 HSPs)
chr5 (60-127)||(4680820-4680887)
[»] chr3 (1 HSPs)
chr3 (22-85)||(43461144-43461208)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 41313445 - 41313742
Alignment:
Q  20 cgtaaatgtatcaaaattgcaaacacatccgaagtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatt 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41313445 cgtaaatgtatcaaaattgcaaacacatctgaagtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatt 41313544  T
Q  120 tgttttttgttggttaatactgtaaataaaattactaacaaaagagagaccagggaagtagggatttgtttgcaatttagatacatttaaggactacagt 219  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41313545 tgttttttgttggttaatactgtgcataaaattactaacaaaagagagaccagggaagtagggatttgtttgcaatttagatacatttaaggactacagt 41313644  T
Q  220 tacagtgccgcataaattcagggaccaaaatggttgtttgctcaaaaacctattaatctgtagaaaaacaatcaatagaataacataacccccctttg 317  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41313645 tacagtgccgcatacattcagggaccaaaatggttgtttgctcaaaaacctattaatctgtagaaaaacaatcaatagaataacataacccctctttg 41313742  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 27486113 - 27486197
Alignment:
Q  178 tagggatttgtttgcaatttagatacatttaaggactacagttacagtgccgcataaattcagggaccaaaatggttgtttgctc 262  Q
    ||||||| |||||||||||| ||||||||||  ||||| ||| || | |||||| |||||||| ||||| | |||||||||||||    
T  27486113 tagggatgtgtttgcaattttgatacatttagagactatagtgacggcgccgcacaaattcagagaccacagtggttgtttgctc 27486197  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 37437698 - 37437808
Alignment:
Q  24 aatgtatcaaaattgcaaacacatc-cgaagtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgt 122  Q
    |||| ||| |||||||||| ||||| | |||||||| |||  | |||||||||  ||||||||| ||| ||||| |||||| ||| ||  |||||| |||    
T  37437698 aatgcatctaaattgcaaatacatcaccaagtgtctctttagtaagtcattttagtcctcaaatgtgtcttttgttagtcactttggtcctcaaatgtgt 37437797  T
Q  123 tttttgttggt 133  Q
    |||||||||||    
T  37437798 tttttgttggt 37437808  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 535746 - 535888
Alignment:
Q  24 aatgtatcaaaattgcaaacacatccg-aagtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgt 122  Q
    |||||||| |||||||||||| || |  ||||||||| ||||||||||| |||| ||||||||| ||||||  || ||||||| | ||  |||||| |||    
T  535746 aatgtatcgaaattgcaaacatattcacaagtgtctaatttattagtcactttggtcctcaaatttgttttaaggcagtcaatatggtcctcaaatgtgt 535845  T
Q  123 tttttgttggttaatactgtaaataaaattactaacaaaagag 165  Q
    |||  |||||| ||| | ||  |||||||||||||||||||||    
T  535846 tttccgttggtcaattcagtccataaaattactaacaaaagag 535888  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 29659178 - 29659263
Alignment:
Q  22 taaatgtatcaaaattgcaaacacatcc-gaagtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaattt 107  Q
    ||||||||||||||||||||||||||||   ||||||| ||||||||||||||||| | ||||||| || |||| ||||||||||||    
T  29659178 taaatgtatcaaaattgcaaacacatccactagtgtctcttttattagtcattttggtactcaaatctg-ttttaggtagtcaattt 29659263  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 27827316 - 27827377
Alignment:
Q  65 ttagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgttttt 126  Q
    |||||||||||||||||||||| ||||||| | |||||| ||| ||| |||||| |||||||    
T  27827316 ttagtcattttgatcctcaaatgtgtttttagttagtcattttggttctcaaatgtgttttt 27827377  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 27831894 - 27831955
Alignment:
Q  65 ttagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgttttt 126  Q
    |||||||||||||||||||||| ||||||| | |||||| ||| ||| |||||| |||||||    
T  27831894 ttagtcattttgatcctcaaatgtgtttttagttagtcattttggttctcaaatgtgttttt 27831955  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 19050732 - 19050804
Alignment:
Q  60 ttttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgttttttgttggt 133  Q
    |||||||| |||||||| ||||||||||| ||||| |||| ||||||| |||| | ||| ||||||| ||||||    
T  19050732 ttttattaatcattttggtcctcaaatat-tttttaggtaatcaatttagttaccgaatctgtttttcgttggt 19050804  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 25009416 - 25009315
Alignment:
Q  26 tgtatcaaaattgcaaacacatccg-aagtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgttt 124  Q
    |||||||||||| ||||||||||   |||| ||| ||||||||||||||||| || |||||||| ||||| |||||||||||| ||  |||||| |||||    
T  25009416 tgtatcaaaattacaaacacatctacaagtatcttttttattagtcattttgctcatcaaatatatttttaggtagtcaatttagtcctcaaatgtgttt 25009317  T
Q  125 tt 126  Q
    ||    
T  25009316 tt 25009315  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 32854598 - 32854640
Alignment:
Q  65 ttagtcattttgatcctcaaatatgttttttggtagtcaattt 107  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||    
T  32854598 ttagtcattttggtcctcaaatgtgttttttgctagtcaattt 32854640  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 14242823 - 14242739
Alignment:
Q  24 aatgtatcaaaattgcaaacacatccgaa-gtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaattt 107  Q
    |||||| ||||| || ||||||||||  | |||||| ||||||||||||||||| |||||| |||||||||| ||| ||||||||    
T  14242823 aatgtaccaaaaatgtaaacacatccacatgtgtctcttttattagtcattttggtcctcagatatgtttttaggttgtcaattt 14242739  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 16527779 - 16527819
Alignment:
Q  54 tgtctattttattagtcattttgatcctcaaatatgttttt 94  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  16527779 tgtcttttttattagtcattttgatcctcaaatatattttt 16527819  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 24354302 - 24354222
Alignment:
Q  28 tatcaaaattgcaaacacatccgaa-gtgtctattttattagtcattttgatcctcaaatatgttttttggtagtcaattt 107  Q
    |||| ||||| |||||||||||  | |||||| ||||||||||||| ||| || |||||||||||||| |||||| |||||    
T  24354302 tatcgaaattacaaacacatccatatgtgtctcttttattagtcatgttggtcttcaaatatgtttttaggtagttaattt 24354222  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 21867824 - 21867909
Alignment:
Q  173 ggaagtagggatttgtttgcaatttagatacatttaaggactacagttacagtgccgcataaattcagggaccaaaatggttgttt 258  Q
    |||| ||||||| ||||||||||||  |||| |||| |||| | ||| |||  ||| || | ||||||||||||||||||||||||    
T  21867824 ggaactagggatgtgtttgcaatttcaatacgtttagggaccatagtgacaacgcctcaaacattcagggaccaaaatggttgttt 21867909  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 21923685 - 21923770
Alignment:
Q  173 ggaagtagggatttgtttgcaatttagatacatttaaggactacagttacagtgccgcataaattcagggaccaaaatggttgttt 258  Q
    |||| ||||||| ||||||||||||  |||| |||| |||| | ||| |||  ||| || | ||||||||||||||||||||||||    
T  21923685 ggaactagggatgtgtttgcaatttcaatacgtttagggaccatagtgacaacgcctcaaacattcagggaccaaaatggttgttt 21923770  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 4680887 - 4680820
Alignment:
Q  60 ttttattagtcattttgatcctcaaatatgttttttggtagtcaatttcgttatcaaatttgtttttt 127  Q
    ||||| ||||||||||||| ||||||| || ||||  ||||||||||| ||| |||||| ||||||||    
T  4680887 ttttaatagtcattttgattctcaaatttgcttttacgtagtcaatttagttttcaaatatgtttttt 4680820  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 43461144 - 43461208
Alignment:
Q  22 taaatgtatcaaaattgcaaacacatcc-gaagtgtctattttattagtcattttgatcctcaaa 85  Q
    ||||||||||||||||||||||||||||  ||| ||||  |||||||||||| ||| || |||||    
T  43461144 taaatgtatcaaaattgcaaacacatccacaagcgtctcatttattagtcatgttggtcttcaaa 43461208  T

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