View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_18 (Length: 290)
Name: NF16825_low_18
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_18 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: scaffold0250 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4290 - 4568
Alignment:
| Q |
1 |
aaggagtttcagtcaaaagaggaggaatttaaatccaaaaagcagcaatttgaaagccaagttgaggacaatctcaaatttgtcaa-------ggacagt |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4290 |
aaggagtttcagtcaaaagaggaggaatttaaatccaaaaagcagcaatttgaaagccaagttgaggacaatctcaaatttgtcaaggatcaaggacagt |
4389 |
T |
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| Q |
94 |
ctcaaagtactccagttaaaagagaatcagtttgaaatgaaaatcagtttgccaatgaaatctttagcaaagacaccaaattgaaacactttattttctt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
4390 |
ctcaaagtactccagttaaaagagaatcagtttgaaatgaaaatcagtttgccaatgaaatctttagcaaagacaccaatttgaaacactttatgttctt |
4489 |
T |
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| Q |
194 |
tgccgattatcaaggaaattacactccggagatggagactgcaaaccaagatttagcaaaggttaaaagagcataagac |
272 |
Q |
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| T |
4490 |
tgccgattatcaaggaaattacactccggagatggagactgcaaaccaagatttagcaaagcttaaaagagcataagac |
4568 |
T |
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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 44951245 - 44951171
Alignment:
| Q |
1 |
aaggagtttcagtcaaaagaggaggaatttaaatccaaaaagcagcaatttgaaagccaagttgaggacaatctc |
75 |
Q |
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| T |
44951245 |
aaggagtttcagtcaaaagaggaggaatttaaatccaaaaagcagcaatttgaaagccaagttgaggacaatctc |
44951171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 45342024 - 45342086
Alignment:
| Q |
77 |
aatttgtcaaggacagtctcaaagtactccagttaaaagagaatcagtttgaaatgaaaatca |
139 |
Q |
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| T |
45342024 |
aatttgtcaaggacagtctcgaagtactccagttaaaagagaatcagtttgaagtgcaaatca |
45342086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 44623951 - 44624000
Alignment:
| Q |
37 |
aaaaagcagcaatttgaaagccaagttgaggacaatctcaaatttgtcaa |
86 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
44623951 |
aaaatgcagcaatttgaaaatcaagttgaggacaatctcaaatctgtcaa |
44624000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 10612349 - 10612410
Alignment:
| Q |
159 |
agcaaagacaccaaattgaaacactttattttctttgccgatta-tcaaggaaattacactc |
219 |
Q |
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|||||| || |||||| |||||||||||| ||||| || ||||| ||||||||||||||||| |
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| T |
10612349 |
agcaaataccccaaatagaaacactttatgttcttcgctgattagtcaaggaaattacactc |
10612410 |
T |
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