View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_20 (Length: 272)
Name: NF16825_low_20
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 30056822 - 30056639
Alignment:
| Q |
72 |
taactatttatttgttcttaattattttaattttgggatttgtaataataataacaggtagttgctgggcattttctgctgtgggtgcactggaaggtat |
171 |
Q |
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| T |
30056822 |
taactatttatttgttcttaattattt-aattttgtaatttgtaacaataattacaggtagttgctgggcattttctgctgtgggtgcactagaaggtat |
30056724 |
T |
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| Q |
172 |
ccaacaaataactagtggaaatttagtgtccctttcggaacaagaactcgtggatcgtgtcagaagtaatttgacaaatggatgc |
256 |
Q |
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| T |
30056723 |
ccaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgtcagaagtaattggacaaatggatgc |
30056639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 29733724 - 29733624
Alignment:
| Q |
107 |
ggatttgtaataataataacaggtagttgctgggcattttctgctgtgggtgcactggaaggtatccaacaaataactagtggaaatttagtgtcccttt |
206 |
Q |
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| T |
29733724 |
ggatttgtaacaacaataacaggtagttgctgggcattttctgctgtggctgcgatagaaggtatccaaaaaataactagtggaaatttagtttcccttt |
29733625 |
T |
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| Q |
207 |
c |
207 |
Q |
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| T |
29733624 |
c |
29733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 29746533 - 29746656
Alignment:
| Q |
132 |
gttgctgggcattttctgctgtgggtgcactggaaggtatccaacaaataactagtggaaatttagtgtccctttcggaacaagaactcgtggatcgtgt |
231 |
Q |
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| T |
29746533 |
gttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataaccagtggaaatttagtctccttttcagagcaacaacttgtggattgtgt |
29746632 |
T |
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| Q |
232 |
cagaagtaatttgacaaatggatg |
255 |
Q |
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| T |
29746633 |
cgcaagtaattggaccaatggatg |
29746656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 29606599 - 29606508
Alignment:
| Q |
164 |
gaaggtatccaacaaataactagtggaaatttagtgtccctttcggaacaagaactcgtggatcgtgtcagaagtaatttgacaaatggatg |
255 |
Q |
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| T |
29606599 |
gaaggtatccaacaaataatcagtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcacaagtaattggaccaatggatg |
29606508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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