View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_22 (Length: 227)
Name: NF16825_low_22
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 40011862 - 40011666
Alignment:
| Q |
19 |
acaagaaacctcacaacctgaacctcacttcgcttactcgtctttttccttttcccattgttattttcatcgaaccaaacctcgttaatttcaatatcat |
118 |
Q |
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| T |
40011862 |
acaagaaacctcacaacctgaacctcacttcgcttactcgtctttttccttttcccattgttattttcatcgaaccaaacctcgttaatttcaatatcat |
40011763 |
T |
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| Q |
119 |
cctcaaaaacccatttcaattcatccatttttctctcacgaaacatttccttcaactcaatcaaactctccctcttaagtttgtctcctctgtgctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40011762 |
cctcaaaaacccatttcaattcatccatttttctctcacgaaacatttccttcaactcaatcaaactctccctcttaagtttctctcctctgtgctc |
40011666 |
T |
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