View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_24 (Length: 222)
Name: NF16825_low_24
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30056711 - 30056506
Alignment:
| Q |
1 |
tagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgctttt |
100 |
Q |
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| T |
30056711 |
tagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgctttt |
30056612 |
T |
|
| Q |
101 |
gaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaataatagtaagaaggttcgtcgccaagttcaga |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30056611 |
gaattcgtcttagaaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaataatagtaagaaggttagtcgccaagttcaga |
30056512 |
T |
|
| Q |
201 |
ttaaga |
206 |
Q |
| |
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|||||| |
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| T |
30056511 |
ttaaga |
30056506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 29746586 - 29746786
Alignment:
| Q |
2 |
agtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttg |
101 |
Q |
| |
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|||||||||||||| ||| |||| || ||| ||||||||||| |||| |||||||||||| |||||||| || |||||| || ||||||||||||| |
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| T |
29746586 |
agtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcgcaagtaattggaccaatggatgtaatggtggtaataagattgatgctttta |
29746685 |
T |
|
| Q |
102 |
aattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaataatagtaagaaggttcgtcgccaagttcagat |
201 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| | || |||||||||||| |
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| T |
29746686 |
aattcaatttagaaaacggtggaattgccacagaagcaagttatccatacaagggagttaaagga---aatagtaagaaggtgcatcaccaagttcagat |
29746782 |
T |
|
| Q |
202 |
taag |
205 |
Q |
| |
|
|||| |
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| T |
29746783 |
taag |
29746786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 29606578 - 29606417
Alignment:
| Q |
2 |
agtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtggttatttgattgatgcttttg |
101 |
Q |
| |
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|||||||||||||| ||| |||| || ||| ||||||||||| ||||| |||||||||||| |||||||| || |||||| || ||||||||||||| |
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| T |
29606578 |
agtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcacaagtaattggaccaatggatgtaatggtggtaataagattgatgctttta |
29606479 |
T |
|
| Q |
102 |
aattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaa |
163 |
Q |
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||||| | |||| ||||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
29606478 |
aattcattttagaaaacggtggaattgccacagaagcaagttatccatacaagggagttaaa |
29606417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 29733561 - 29733496
Alignment:
| Q |
87 |
tgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtaca |
152 |
Q |
| |
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||||| |||||||| ||||| | |||| ||| ||||||||||| |||||||||| |||||| |||| |
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| T |
29733561 |
tgattaatgcttttaaattcattttagaaaatggtggaattgcgacagaagcaaattatccataca |
29733496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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