View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_3 (Length: 616)
Name: NF16825_low_3
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 6913699 - 6913779
Alignment:
| Q |
281 |
ggttggaaacgagagatgttctagaaaataaaattatcaggaaatatgcatcattttccttacatcagtcaaaatcatcaaa |
362 |
Q |
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| T |
6913699 |
ggttggaaacgagagatgttctagaaaataaaattatcaggaaagatgaataattttccttacct-agtcaaaatcttcaaa |
6913779 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 6913784 - 6913866
Alignment:
| Q |
417 |
ttgtggaaaaccgagttctgttacaaaaacatgattcatgagaaaagttgtattagta-tttatcaacactaacgatctctac |
498 |
Q |
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| T |
6913784 |
ttgtggaaaactgagttattttacaaaaacatgattcatgagaaatgttgtattagtattttatcaaaaccaacgatctctac |
6913866 |
T |
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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 590
Target Start/End: Original strand, 6233495 - 6233547
Alignment:
| Q |
538 |
tgaacctcattttctttagtatcattctctccgtaaatgtcatcattcaactt |
590 |
Q |
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| T |
6233495 |
tgaacctcattttctctactatctttctctcaataaatgtcatcattcaactt |
6233547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 590
Target Start/End: Original strand, 6241362 - 6241414
Alignment:
| Q |
538 |
tgaacctcattttctttagtatcattctctccgtaaatgtcatcattcaactt |
590 |
Q |
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| T |
6241362 |
tgaacctcattttctctactatctttctctcaataaatgtcatcattcaactt |
6241414 |
T |
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