View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_5 (Length: 569)
Name: NF16825_low_5
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 37599417 - 37599623
Alignment:
| Q |
14 |
caaagggtgggaatgagtcgccatctttacccaacggttggtcattcaaaaattaatcaattgcatcgtcattcgtcagatcaaattggtactttgtctg |
113 |
Q |
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| T |
37599417 |
caaagggtgggaatgagtcgccatctttacccaacggttggtcattcaaaaattaatcaattgcatcgtcattcgtcagatcaaattggtactttgtctg |
37599516 |
T |
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| Q |
114 |
cttgtgcaactacttctcaccaatgggttcatgccacgcaaaacatttgttttattatgttatggagcaaaataatgaaataaataagtatatctccttt |
213 |
Q |
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| T |
37599517 |
cttgtgcaactacttctcaccaatgggttcatgccacgcaaaacatttgttttattatgttatggagcaaaataatgaaataaataagtatatctccttt |
37599616 |
T |
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| Q |
214 |
tcttggc |
220 |
Q |
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||||||| |
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| T |
37599617 |
tcttggc |
37599623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 37599687 - 37599799
Alignment:
| Q |
284 |
atagttgaactaatattattgacccatcnnnnnnntttatcatggactctattataattttttggataatttattatatccaagagtattgttggaaatt |
383 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37599687 |
atagttgaactaatattattgacccatcaaaaaaaattatcatggactctattataattttttggataatttattatatccaagagtattgttgaaaatt |
37599786 |
T |
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| Q |
384 |
aatatcttgtagc |
396 |
Q |
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| T |
37599787 |
aatatcttgtagc |
37599799 |
T |
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