View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16825_low_6 (Length: 525)
Name: NF16825_low_6
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 70 - 510
Target Start/End: Complemental strand, 37154181 - 37153754
Alignment:
| Q |
70 |
tgataaagttcaattaccggctttgtaaaaaaggcaaaggcttcatgccaacatttggagttaaagcactaaaacgtggctgacaacaacagctgtggat |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37154181 |
tgataaagttcaattaccggctttgtaaaaaaggcaaaggcttcatgccaacatttggagttaaagcactaaaacgtggctgacaacaacagctgtggat |
37154082 |
T |
|
| Q |
170 |
aaatgatcttttggagccttcattctctgtaattgataatttcgatggcagattcatagatcccatttgacaagccatgtattctgaacagtaattgtga |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37154081 |
aaatgatcttttggagccttcattctctgtaattgataatttcgacggcagattcatagatcccatttgacaagccatgtattctgaacagtaattgtga |
37153982 |
T |
|
| Q |
270 |
aattctcagaattgtttagtgttctcaggctcctaatctgcataagttccaagtatataaaagcataaaaatcaacatgactaaaattgcaaactattag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37153981 |
aattctcagaattgtttagtgttctcaggctcctaatctgcataagttccaagtatataaaagcataaaaatcaacatgactaaaattgcaaactattag |
37153882 |
T |
|
| Q |
370 |
attagtaaaggtcatggaagaagaagaaaaaactaatgtaacaaactaatttataggttttaattggatatagctatataatgttgtaagagaaacccag |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37153881 |
attagtaaaggtcatggaagaagaagaaaaaac-------------taatttataggttttaattggatatagctatataatgttgtaagagaaacccag |
37153795 |
T |
|
| Q |
470 |
ttgcgtaaactaaagaagtgaaagaatgttacctatctgtg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37153794 |
ttgcgtaaactaaagaagtgaaagaatgttacctatctgtg |
37153754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University