View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16825_low_7 (Length: 492)

Name: NF16825_low_7
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16825_low_7
NF16825_low_7
[»] chr1 (4 HSPs)
chr1 (1-279)||(23262342-23262628)
chr1 (341-400)||(23262189-23262248)
chr1 (44-114)||(51383336-51383406)
chr1 (415-447)||(23262138-23262170)
[»] chr4 (3 HSPs)
chr4 (4-279)||(56477320-56477603)
chr4 (341-400)||(56477698-56477757)
chr4 (415-447)||(56477777-56477809)
[»] chr6 (2 HSPs)
chr6 (174-279)||(444332-444436)
chr6 (349-478)||(444716-444844)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-101)||(255231-255288)
[»] chr7 (1 HSPs)
chr7 (44-101)||(40725091-40725148)
[»] chr5 (1 HSPs)
chr5 (44-101)||(7573985-7574042)
[»] chr3 (2 HSPs)
chr3 (44-101)||(949703-949760)
chr3 (44-101)||(14172286-14172343)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 23262628 - 23262342
Alignment:
Q  1 aacgtaagattattcacataactgaggtaacggaattcaacttggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaaca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23262628 aacgtaagattattcacataactgaggtaacagaattcaacttggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaaca 23262529  T
Q  101 ttgaaattgaactttagaacaccaaagtcactcctatcatg----------cttgttgtcaaac----ttaaaagctcttttccaaggctctcttacttg 186  Q
    | ||||||| |||||||||||||| ||||||||||||||||          |||||||||||||    |||||||||||||||||||||||||||||| |    
T  23262528 tcgaaattggactttagaacaccagagtcactcctatcatgcttgctctagcttgttgtcaaacttaattaaaagctcttttccaaggctctcttactcg 23262429  T
Q  187 atcaaaactcaagtctttttctcttttctattccaacatttagctacagtcttcatacctatcatcttatcgtgcttcatggatatcatcatg 279  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  23262428 atcaaaactc-agtctttttttcttttctattccaacatttagctacagtcttcatacctatcatct-----tgcttcatggatatcatcatg 23262342  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 23262248 - 23262189
Alignment:
Q  341 gaggagactaaatcatttgttacatatgaggatgtcatacactaccaagcaagctttctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23262248 gaggagactaaatcatttgttacatatgaggatgtcatacactaccaagcaagttttctc 23262189  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 51383336 - 51383406
Alignment:
Q  44 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacattgaaattgaactt 114  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||  |||||| ||||    
T  51383336 ggttatttgtttgtgcaatcaaagtgattgatactgttatactcaaacttaagaacatcaaaattgtactt 51383406  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 447
Target Start/End: Complemental strand, 23262170 - 23262138
Alignment:
Q  415 gacactaccaagtaaactccaagattatgaaca 447  Q
    |||||||||||||||||||||||||||||||||    
T  23262170 gacactaccaagtaaactccaagattatgaaca 23262138  T

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Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 56477320 - 56477603
Alignment:
Q  4 gtaagattattcacataactgaggtaacggaattcaacttggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacattg 103  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  56477320 gtaagattattcacataactgaggtaacataattcaacttggttatttgtttatgcaatcatagtgattgatattattatactcaaacttaagaacatcg 56477419  T
Q  104 aaattgaactttagaacaccaaagtcactcctatcat----------gcttgttgtcaaac----ttaaaagctcttttccaaggctctcttacttgatc 189  Q
    |||||| | |||||||||||| |||||||||||||||          ||||||||||||||    |||||||||||||||||||||||||||||| ||||    
T  56477420 aaattggattttagaacaccagagtcactcctatcatgcttgctctagcttgttgtcaaacttaattaaaagctcttttccaaggctctcttactcgatc 56477519  T
Q  190 aaaactcaagtctttttctcttttctattccaacatttagctacagtcttcatacctatcatcttatcgtgcttcatggatatcatcatg 279  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  56477520 aaaactc-agtctttttttcttttctattccaacatttagctacagtcttcatacctatcatct-----tgcttcatggatatcatcatg 56477603  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 56477698 - 56477757
Alignment:
Q  341 gaggagactaaatcatttgttacatatgaggatgtcatacactaccaagcaagctttctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  56477698 gaggagactaaatcatttgttacatatgaggatgtcatacactaccaagcaagttttctc 56477757  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 56477777 - 56477809
Alignment:
Q  415 gacactaccaagtaaactccaagattatgaaca 447  Q
    |||||||||||||||||||||||||||||||||    
T  56477777 gacactaccaagtaaactccaagattatgaaca 56477809  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 174 - 279
Target Start/End: Original strand, 444332 - 444436
Alignment:
Q  174 gctctcttacttgatcaaaactcaagtctttttctcttttctattccaacatttagctacagtcttcatacctatcatcttatcgtgcttcatggatatc 273  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  444332 gctctcttacttgatcaaaactta-gtctttttttcttttctattccaacatttagctacagtcttcatacctatcatcttatcttgcttcatggatatc 444430  T
Q  274 atcatg 279  Q
    ||||||    
T  444431 atcatg 444436  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 349 - 478
Target Start/End: Original strand, 444716 - 444844
Alignment:
Q  349 taaatcatttgttacatatgaggatgtcatacactaccaagcaagctttctcnnnnnnnnnnnnnngacactaccaagtaaactccaagattatgaacat 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||||     
T  444716 taaatcatttgttacatatgaggatgtcatacactaccaagcaagttttctcaaaaacaaaaaaaagacactaccaagtaaactccaagattatgaaca- 444814  T
Q  449 ttacaccagacctattgcaaacatatatgt 478  Q
    ||||||||||||||||||||||| ||||||    
T  444815 ttacaccagacctattgcaaacagatatgt 444844  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 255288 - 255231
Alignment:
Q  44 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacat 101  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  255288 ggttatttatttgtgcaatcaaagtgattgatattactatactcaaacttaaaaacat 255231  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 40725148 - 40725091
Alignment:
Q  44 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacat 101  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  40725148 ggttatttatttgtgcaatcaaagtgattgatattactatactcaaacttaaaaacat 40725091  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 7573985 - 7574042
Alignment:
Q  44 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacat 101  Q
    |||||||| ||| |||||||||||||||||||| || ||||||||||||||| |||||    
T  7573985 ggttatttatttgtgcaatcaaagtgattgatactactatactcaaacttaaaaacat 7574042  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 949703 - 949760
Alignment:
Q  44 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacat 101  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||| ||||||| |||||    
T  949703 ggttatttatttgtgcaatcaaagtgattgatattactatactctaacttaaaaacat 949760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 14172286 - 14172343
Alignment:
Q  44 ggttatttgtttatgcaatcaaagtgattgatattattatactcaaacttaagaacat 101  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||| |||||    
T  14172286 ggttatttatttgtgcaatcaaagtgattgatattactatactcaaacataaaaacat 14172343  T

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