View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16825_low_8 (Length: 472)
Name: NF16825_low_8
Description: NF16825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16825_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 453
Target Start/End: Complemental strand, 46549970 - 46549532
Alignment:
| Q |
15 |
catcacacggcaaataacttgccatagacttcagaaaatgtctggtggtgaagcaacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaaa |
114 |
Q |
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| T |
46549970 |
catcacacggcaaataacttgccctagacttcagaaaatgtctggtggtgaagtaacgaaaacaaaggttcaaccaaatttttgctggctaatacttaaa |
46549871 |
T |
|
| Q |
115 |
acgcaaagttgcatataatatgcattaaattaaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattgtctgagattaggt |
214 |
Q |
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| T |
46549870 |
acgcaaagttgcatataatatgcattaaattaaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattgtctgagattaggt |
46549771 |
T |
|
| Q |
215 |
cacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaaatgtgactcaatattgtgatatgta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549770 |
cacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgagtttgtgatacctgaggcagttgaaaaatgtgactcaatattgtgatatgta |
46549671 |
T |
|
| Q |
315 |
atttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttgattgtgtataacattctccata |
414 |
Q |
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| T |
46549670 |
atttggactttaggttggtcaatcaacgccgtatcttgaatcgaaacatctggaccatttggtaagaattctggtttgattgtgtataacattctccata |
46549571 |
T |
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| Q |
415 |
gagaagacatccagggatcaagagtaccttcgtagctac |
453 |
Q |
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| T |
46549570 |
gagaagacagccagggatcaagagtaccttcgtagctac |
46549532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 38 - 453
Target Start/End: Complemental strand, 1026502 - 1026088
Alignment:
| Q |
38 |
atagacttcagaaaatgtctggtggtgaagcaacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaaaacgcaaagttgcatataatatgc |
137 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
1026502 |
atagacttcagaaaatgtctggtggtgaagtaacgaaaacaaaggttcaaccaaatttgtgttgtctaatacttaatacgcaaagttgcatataatatgc |
1026403 |
T |
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| Q |
138 |
attaaattaaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatat |
237 |
Q |
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| T |
1026402 |
atcat-ttaaattcataccagtgataaattgtagacgacaaaataaacatacataaatagattgtctgagattaggtcacaataacagctaatggaatat |
1026304 |
T |
|
| Q |
238 |
tgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaat |
337 |
Q |
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| T |
1026303 |
tgcaagccaaccaagaatttaccgagtttgtgatacctgaggcagttgaaaaatgtgactcgatattgtgatatgtaatttggactttaggttggtcaat |
1026204 |
T |
|
| Q |
338 |
caacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttgattgtgtataacattctccatagagaagacatccagggatcaaga |
437 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
1026203 |
caacactgtatcttgaatcgaaacatctggaccatttggtaagaattctggtttgatcgtgtttaaaattctccatagagaagacatccagggatcaaga |
1026104 |
T |
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| Q |
438 |
gtaccttcgtagctac |
453 |
Q |
| |
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|||||||| ||||||| |
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| T |
1026103 |
gtaccttcatagctac |
1026088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 29 - 451
Target Start/End: Complemental strand, 40828249 - 40827827
Alignment:
| Q |
29 |
taacttgccatagacttcagaaaatgtctg--gtggtgaagcaacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaaaacgcaaagttgc |
126 |
Q |
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||||||||||| ||||| | |||||||||| ||||||||| || |||||||||||||||||||| ||| | | ||||||||| | |||| |||| |
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| T |
40828249 |
taacttgccatcgactttacaaaatgtctgtggtggtgaagtaatgaaaacaaaggttcaaccaattttttacaacctaatacttggtatacaaaattgc |
40828150 |
T |
|
| Q |
127 |
atataatatgcattaaatt---aaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattgtctgagattaggtcacaataat |
223 |
Q |
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| T |
40828149 |
aaataatatgcatcgtatttttatattcatataagtggtagattatagacaacaaaagaaacatacataaatagactgtctgag-----gtcacaataat |
40828055 |
T |
|
| Q |
224 |
agctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaaatgtgact--caatattgtgatatgtaatttgga |
321 |
Q |
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| T |
40828054 |
tactgatggaacattgcaagccaaccaagaaattactgagtttgtgatacctgaggaa--tgagacacgacattttcaatattgtgatatgtgatttgga |
40827957 |
T |
|
| Q |
322 |
ctttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttgattgtgtataacattctccatagagaaga |
421 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
40827956 |
ctttaggttggtcaatcaacgttgtatcttgaatcaaaacatctggaccactaggtaagagttctggtttgatcatgtttaacattctccatagagaaga |
40827857 |
T |
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| Q |
422 |
catccagggatcaagagtaccttcgtagct |
451 |
Q |
| |
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|| ||| ||||||||||||||||| ||||| |
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| T |
40827856 |
cagccaaggatcaagagtaccttcatagct |
40827827 |
T |
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