View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16826_low_1 (Length: 470)
Name: NF16826_low_1
Description: NF16826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16826_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 45009491 - 45009307
Alignment:
| Q |
11 |
ttatactcataaaatcaaagagaataaatttaaccatggtttttgcaggggttgagtcagtttctttggatatgaaggaccagaaattgaccttaacagg |
110 |
Q |
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| T |
45009491 |
ttatactcataaaatcaaagagaataaatttaaccatggtttttgcaggggttgagtcagtttctttggatatgaaggaccagaaattgaccttaacagg |
45009392 |
T |
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| Q |
111 |
agacatagacgttgtgcatgtagtgggaaagttaaggaagctgtgtcatcctaagatactatctgttggaccagccaaggagcct |
195 |
Q |
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| T |
45009391 |
agacatagacgttgtgcatgtagtgggaaagttaaggaagctgtgtcatcctaagatactatctgttggaccagccaaggagcct |
45009307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 249 - 420
Target Start/End: Complemental strand, 45009253 - 45009082
Alignment:
| Q |
249 |
ttcagcagcacctggttttgtgaaggtttgtgaaacctatcattatcctataatgatgggacaaccacattactattacaccagtgtggaagagaatcct |
348 |
Q |
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| T |
45009253 |
ttcagcagcacctggttttgtgaaggtttgtgaaacctatcattatcctataatgatgggacaaccacattactattacaccagtgtggaagagaatcct |
45009154 |
T |
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| Q |
349 |
agtgcatgtgtcatatgttaagttttagattatttgaagaaaaaagagtacattgttgttgaggagtaatcg |
420 |
Q |
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| T |
45009153 |
agtgcatgtgtcatatgttaagttttagattatttgaagaaaaaagagtacattgttgttgaggagtaatcg |
45009082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 45041325 - 45041265
Alignment:
| Q |
53 |
ttgcaggggttgagtcagtttctttggatatgaaggaccagaaattgaccttaacaggaga |
113 |
Q |
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| T |
45041325 |
ttgcaggggttgagtcagtttcaatagacatgaaagacaagaaaatgaccttaataggaga |
45041265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 17861729 - 17861666
Alignment:
| Q |
52 |
tttgcaggggttgagtcagtttctttggatatgaaggaccagaaattgaccttaacaggagaca |
115 |
Q |
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| T |
17861729 |
tttgcaggggtagaatcagtttctgtggacatgaaagacaagaaattaaccttaactggagaca |
17861666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 17872331 - 17872268
Alignment:
| Q |
52 |
tttgcaggggttgagtcagtttctttggatatgaaggaccagaaattgaccttaacaggagaca |
115 |
Q |
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| T |
17872331 |
tttgcaggggtagaatcagtttctgtggacatgaaagacaagaaattaaccttaactggagaca |
17872268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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