View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16826_low_2 (Length: 404)
Name: NF16826_low_2
Description: NF16826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16826_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 6169979 - 6169654
Alignment:
| Q |
23 |
agtagaaaccctcatccttttttggaacaaaagttgtcgacgaatggatgaaagtgtacacgttacgttggtcgatttgaaaacaccaacgggacaaatg |
122 |
Q |
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| T |
6169979 |
agtagaaaccctcatccttttttggaacaaaagttgtcgacgaatgcatgaaagtgtacacgttacattggtcgatttgaaaacaccaacgggacaaatg |
6169880 |
T |
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| Q |
123 |
aggctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaataaaccttccaaattttgtaatgttt |
222 |
Q |
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| T |
6169879 |
aagctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaataaaccttccaaattttgtaatgttt |
6169780 |
T |
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| Q |
223 |
tctatgtttatcctcaaaaaacaaattccnnnnnnnnnnnnaatacaaacttttgttttcttacgcatgcatctccaattttattctatagggcttgaac |
322 |
Q |
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| T |
6169779 |
tctatgtttatcctcaaaaaacaaattcc--atttttttttaatacaaacttttgtattcttacgcatgcatctccaattttattctatagggcttgaac |
6169682 |
T |
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| Q |
323 |
tctctatttataaaaacaatcaactacg |
350 |
Q |
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| T |
6169681 |
tctctatttataaaaacaatcaaatacg |
6169654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 6168649 - 6168605
Alignment:
| Q |
347 |
tacgatcacaaacggtttaggtcggaaaaacaatttatgtgagaa |
391 |
Q |
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| T |
6168649 |
tacgattacaaacggtttaggtcggaaaaacaatttatgtgagaa |
6168605 |
T |
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