View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16827_high_3 (Length: 375)
Name: NF16827_high_3
Description: NF16827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16827_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 39844416 - 39844496
Alignment:
| Q |
183 |
attcatgagtaaatagtgccactgaatgaaattggttggaagattttccattttactcgaaataagggtattgtatacagc |
263 |
Q |
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| T |
39844416 |
attcgtgagtaaatagtgccgccgaatgaaattggttggaagattttccattttactcaaaataagggcattgtatacagc |
39844496 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 39844546 - 39844657
Alignment:
| Q |
264 |
tgttaaatactttgattagcaagagtatcaaagtttaaatcacgcaag---------------caacagtggcctggcagcaccaatatatgaaggagta |
348 |
Q |
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| T |
39844546 |
tgttaaatactttgattagcaagagtatcaaagtttaaatcaagcaacaaacagtgaagaaaacaacagtggcctggcagcaccaatatatcaaggagta |
39844645 |
T |
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| Q |
349 |
agtggcaatgat |
360 |
Q |
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| T |
39844646 |
agtggcaatgat |
39844657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 29428991 - 29428947
Alignment:
| Q |
136 |
gcagacgttcctgtatgatttcctgaaaccagcaaatatcttatt |
180 |
Q |
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| T |
29428991 |
gcagacattcctggatgatttccagaaaccagcaaatctcttatt |
29428947 |
T |
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