View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16827_high_7 (Length: 243)

Name: NF16827_high_7
Description: NF16827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16827_high_7
NF16827_high_7
[»] chr4 (19 HSPs)
chr4 (3-222)||(11786896-11787115)
chr4 (3-222)||(11799063-11799282)
chr4 (129-222)||(400489-400580)
chr4 (142-222)||(40197115-40197195)
chr4 (142-222)||(56511409-56511489)
chr4 (141-222)||(7806510-7806589)
chr4 (142-222)||(17077058-17077136)
chr4 (142-222)||(28245900-28245978)
chr4 (129-171)||(21498423-21498465)
chr4 (145-206)||(14945009-14945070)
chr4 (142-206)||(33629771-33629835)
chr4 (142-222)||(49380794-49380873)
chr4 (139-203)||(53386214-53386278)
chr4 (145-206)||(3640320-3640382)
chr4 (142-218)||(10390394-10390467)
chr4 (8-60)||(21451454-21451506)
chr4 (7-59)||(37832963-37833015)
chr4 (161-220)||(41743271-41743328)
chr4 (145-220)||(45684303-45684379)
[»] chr1 (14 HSPs)
chr1 (142-222)||(29413253-29413333)
chr1 (142-206)||(38871083-38871147)
chr1 (142-222)||(11590531-11590610)
chr1 (7-57)||(51690466-51690516)
chr1 (145-222)||(3774184-3774261)
chr1 (142-202)||(20429163-20429223)
chr1 (113-157)||(38733204-38733248)
chr1 (145-213)||(40073371-40073438)
chr1 (142-222)||(42844934-42845014)
chr1 (7-56)||(10532214-10532263)
chr1 (119-171)||(2120136-2120188)
chr1 (142-222)||(5325045-5325125)
chr1 (145-220)||(7171644-7171717)
chr1 (142-221)||(9381012-9381089)
[»] chr6 (14 HSPs)
chr6 (144-222)||(2904908-2904986)
chr6 (142-222)||(11316955-11317033)
chr6 (142-222)||(29742553-29742631)
chr6 (142-222)||(30526950-30527028)
chr6 (142-222)||(26098454-26098534)
chr6 (142-206)||(8929957-8930021)
chr6 (142-222)||(25998929-25999009)
chr6 (142-222)||(26098660-26098740)
chr6 (142-206)||(30539347-30539411)
chr6 (142-220)||(19712525-19712601)
chr6 (119-156)||(3921617-3921654)
chr6 (145-214)||(13692293-13692362)
chr6 (145-206)||(24558698-24558759)
chr6 (7-63)||(12766480-12766536)
[»] chr7 (20 HSPs)
chr7 (142-222)||(4258118-4258196)
chr7 (142-222)||(6751624-6751702)
chr7 (142-222)||(33855597-33855677)
chr7 (119-222)||(6782920-6783023)
chr7 (7-57)||(35828347-35828397)
chr7 (143-222)||(23821449-23821526)
chr7 (144-222)||(48113907-48113982)
chr7 (142-220)||(258541-258617)
chr7 (142-222)||(8681996-8682075)
chr7 (142-222)||(16565006-16565084)
chr7 (142-222)||(16600578-16600656)
chr7 (142-206)||(6813211-6813275)
chr7 (145-222)||(43366318-43366393)
chr7 (141-222)||(6329653-6329732)
chr7 (7-56)||(21939340-21939389)
chr7 (146-206)||(5266225-5266285)
chr7 (145-220)||(7832876-7832952)
chr7 (8-52)||(21938119-21938162)
chr7 (142-206)||(24426661-24426725)
chr7 (139-171)||(39808559-39808591)
[»] scaffold1138 (1 HSPs)
scaffold1138 (144-222)||(1993-2069)
[»] chr2 (17 HSPs)
chr2 (139-206)||(32667087-32667154)
chr2 (2-57)||(31227149-31227204)
chr2 (145-222)||(2464934-2465009)
chr2 (142-197)||(93672-93727)
chr2 (119-166)||(10571029-10571076)
chr2 (141-222)||(33277467-33277546)
chr2 (136-221)||(4439218-4439303)
chr2 (142-203)||(39108332-39108393)
chr2 (142-222)||(40009879-40009959)
chr2 (142-197)||(93399-93454)
chr2 (7-57)||(23993721-23993771)
chr2 (142-171)||(7257570-7257599)
chr2 (145-206)||(8044723-8044784)
chr2 (145-206)||(17265150-17265211)
chr2 (145-222)||(17727312-17727389)
chr2 (7-63)||(15392959-15393015)
chr2 (142-206)||(39108200-39108264)
[»] chr5 (16 HSPs)
chr5 (142-222)||(3015535-3015613)
chr5 (142-222)||(36307837-36307915)
chr5 (142-206)||(18107610-18107674)
chr5 (142-221)||(18107739-18107818)
chr5 (148-222)||(15510623-15510696)
chr5 (7-56)||(20364681-20364730)
chr5 (7-56)||(20369399-20369448)
chr5 (142-222)||(39268134-39268212)
chr5 (119-155)||(11896671-11896707)
chr5 (142-202)||(36878438-36878498)
chr5 (129-206)||(37781986-37782065)
chr5 (7-53)||(18159714-18159760)
chr5 (129-171)||(37656910-37656952)
chr5 (129-206)||(8081051-8081128)
chr5 (8-53)||(37426720-37426765)
chr5 (8-56)||(38498118-38498166)
[»] chr3 (20 HSPs)
chr3 (142-206)||(12799789-12799853)
chr3 (142-222)||(35011769-35011849)
chr3 (114-206)||(39269385-39269477)
chr3 (145-203)||(12799985-12800044)
chr3 (129-167)||(21833417-21833455)
chr3 (138-222)||(35015388-35015470)
chr3 (142-222)||(39956586-39956666)
chr3 (142-206)||(40230567-40230631)
chr3 (142-206)||(44145252-44145316)
chr3 (142-220)||(20737132-20737208)
chr3 (142-206)||(37223687-37223753)
chr3 (142-205)||(9264427-9264492)
chr3 (8-54)||(49579179-49579225)
chr3 (7-57)||(50420887-50420937)
chr3 (119-156)||(8142635-8142672)
chr3 (7-56)||(16883800-16883849)
chr3 (145-206)||(25578859-25578920)
chr3 (142-222)||(27177524-27177602)
chr3 (142-222)||(33909746-33909824)
chr3 (145-206)||(40926895-40926956)
[»] chr8 (10 HSPs)
chr8 (142-222)||(15857086-15857164)
chr8 (145-206)||(22188800-22188861)
chr8 (145-220)||(25186638-25186714)
chr8 (145-196)||(36039930-36039981)
chr8 (145-220)||(41456424-41456498)
chr8 (142-222)||(43599423-43599503)
chr8 (142-220)||(30065897-30065974)
chr8 (7-56)||(9498908-9498957)
chr8 (2-58)||(9234741-9234797)
chr8 (142-206)||(33435791-33435855)
[»] scaffold0372 (1 HSPs)
scaffold0372 (8-60)||(119-171)
[»] scaffold0172 (1 HSPs)
scaffold0172 (7-55)||(9902-9950)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 11787115 - 11786896
Alignment:
Q  3 ggggcaaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaatatttggttctaccaactgggggagatcctgcgagagaagga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11787115 ggggcaaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaatatttggttctaccaattgggggagatcctgcgagagaagga 11787016  T
Q  103 atgtggaaacagattttgttaggtttaaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaa 202  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11787015 atgtggaaaccgattttgttaggcttaaccacgatttctaacatgatatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagcccaa 11786916  T
Q  203 agagagtgttgggcgtgagg 222  Q
    ||||||||||||| ||||||    
T  11786915 agagagtgttgggtgtgagg 11786896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 11799282 - 11799063
Alignment:
Q  3 ggggcaaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaatatttggttctaccaactgggggagatcctgcgagagaagga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11799282 ggggcaaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaatatttggttctaccaattgggggagatcctgcgagagaagga 11799183  T
Q  103 atgtggaaacagattttgttaggtttaaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaa 202  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11799182 atgtggaaaccgattttgttaggcttaaccacgatttctaacatgatatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagcccaa 11799083  T
Q  203 agagagtgttgggcgtgagg 222  Q
    ||||||||||||| ||||||    
T  11799082 agagagtgttgggtgtgagg 11799063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 400580 - 400489
Alignment:
Q  129 aaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||| ||||||||| ||||||||||| |||||||||||||| |||| |||| | | ||||||||||| ||||  ||| ||||||||||||||    
T  400580 aaccacaatttctaacctggtatcagagcttgtcgaattcaagggtcacctacttcttcacgcaccaagcccaa--agaatgttgggcgtgagg 400489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 40197115 - 40197195
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||| ||||||||||||||||||| | || ||||||||| ||||| ||||  |||| |||||||||||| |||||    
T  40197115 aacatggtattagagtttgtcgaattcaagggccacctacctatcaacgcagcaagctcaaaaagagtgttgggcatgagg 40197195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 56511409 - 56511489
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| |  | |||||||||||||||||||| ||||  |||| | |||||||||||    
T  56511409 aacatggtatcagagcttgtcgaattcaagggctacctacctatccacgcaccaagtccaagaagagagctgggcgtgagg 56511489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 7806589 - 7806510
Alignment:
Q  141 taacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||||||| || ||||||||||| | || |||||||| ||||||||||| ||||  |||||| |||||||||||    
T  7806589 taacatggtatcagagcttttcgaattcaagggacacctacctattcacgcaccaagcccaa--agagtgctgggcgtgagg 7806510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 17077136 - 17077058
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || |||||||| ||||||||||| | ||  |||||| |||||||||||    
T  17077136 aacatggtatcagagcttgtcgaattcaagggccacctacctattcacgcaccaagcctaa--agagtgatgggcgtgagg 17077058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 28245900 - 28245978
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || |||||||| ||||||||||  ||||  |||||| |||||||||||    
T  28245900 aacatggtatcagagcttgtcgaattcaagggccacctacctattcacgcaccaaacccaa--agagtgctgggcgtgagg 28245978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 21498423 - 21498465
Alignment:
Q  129 aaccacgatttctaacatggtatcagagtttgtcgaattcaag 171  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  21498423 aaccacgatttctaatatggtatcagagcttgtcgaattcaag 21498465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 14945009 - 14945070
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||  ||||||||||||| |||| ||||| || ||||||||||| ||||||||    
T  14945009 atggtatcagagcatgtcgaattcaagggtcacctaccgattcacgcaccaagcccaaagag 14945070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 33629771 - 33629835
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| ||||||| ||||||   || |||||||| ||||||||||| ||||||||    
T  33629771 aacatggtatcagagcttgtcgacttcaaggaccacctacctattcacgcaccaagcccaaagag 33629835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 49380873 - 49380794
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||| ||| | |  |||||||| ||||||||||| || || |||||| |||||||||||    
T  49380873 aacatggtatcagagcttgtcgaatttaagggccgcctacctattcacgcaccaagccccaa-agagtgctgggcgtgagg 49380794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 53386278 - 53386214
Alignment:
Q  139 tctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaa 203  Q
    |||||||||||||||||| |||| ||||||||| |||| || | ||| ||||||||||| |||||    
T  53386278 tctaacatggtatcagagcttgttgaattcaagggtcacctgcatattcacgcaccaagcccaaa 53386214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 3640320 - 3640382
Alignment:
Q  145 atggtatcagagt-ttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||  |||||||||||||| | || ||||| |||||||||||||| ||||||||    
T  3640320 atggtatcagagccttgtcgaattcaagggccacctaccgatccacgcaccaagcccaaagag 3640382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 10390467 - 10390394
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgt 218  Q
    ||||||||||||||| |||||||||||||| | || ||||| || |||||||||||  |||  ||||||||||||||    
T  10390467 aacatggtatcagagcttgtcgaattcaag-ggcacctacccattcacgcaccaagctcaa--agagtgttgggcgt 10390394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 21451506 - 21451454
Alignment:
Q  8 aaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaa 60  Q
    ||||||||||||||  || | ||||||||  ||||||||||||||||||||||    
T  21451506 aaaatcgcaactttgagaaagttaggaggctaaaactgctattaagccttaaa 21451454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 37832963 - 37833015
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaa 59  Q
    |||||||||||||||  || | ||||||||  |||||||||||||||||||||    
T  37832963 caaaatcgcaactttaggaaagttaggaggctaaaactgctattaagccttaa 37833015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 41743328 - 41743271
Alignment:
Q  161 tcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    ||||||||||| || |||||||||| || |||||||| ||||  ||||||||||||||||    
T  41743328 tcgaattcaagggtgatctacctattcaagcaccaagtccaa--agagtgttgggcgtga 41743271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 45684379 - 45684303
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagag-tgttgggcgtga 220  Q
    ||||||||||||  |||||| |||||| | || ||||| || ||||||||||| |||||||| | ||||||||||||    
T  45684379 atggtatcagagcgtgtcgatttcaagggccacctaccgattcacgcaccaagcccaaagagtgttgttgggcgtga 45684303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 29413253 - 29413333
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || |||||||||||||||||||| ||||| |||||| ||| |||||||    
T  29413253 aacatggtatcagagcttgtcgaattcaagggccacctacctatccacgcaccaagcccaaaaagagtgctggacgtgagg 29413333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 38871147 - 38871083
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| |||||||||||||| | || |||||||||||||||||||| ||||||||    
T  38871147 aacatggtatcagagcttgtcgaattcaagggccacctacctatccacgcaccaagcccaaagag 38871083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 11590531 - 11590610
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | |  |||||||| ||||||||||| || || |||||| |||||||||||    
T  11590531 aacatggtatcagagcttgtcgaattcaagggccgcctacctattcacgcaccaagccccaa-agagtgctgggcgtgagg 11590610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 51690466 - 51690516
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcctt 57  Q
    |||||||||||||||| ||||||||||||  ||||||| ||||||||||||    
T  51690466 caaaatcgcaactttcggatatttaggagatcaaaactactattaagcctt 51690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 3774261 - 3774184
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||| |||||||||||||| ||||  ||||||||||| |||  |  ||||| ||||||||| ||||||||    
T  3774261 atggtatcagagcttgtcgaattcaagggtcacttacctatccacacactgatcccaaaaagagtgttgagcgtgagg 3774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 20429223 - 20429163
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaa 202  Q
    ||||| ||||||||| |||||||||||||| | || ||| |||||||||||||||| ||||    
T  20429223 aacattgtatcagagcttgtcgaattcaagggccacctatctatccacgcaccaagcccaa 20429163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 38733204 - 38733248
Alignment:
Q  113 agattttgttaggtttaaccacgatttctaacatggtatcagagt 157  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  38733204 agattgtgttaggttcaaccacgatttctaagatggtatcagagt 38733248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 40073371 - 40073438
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttg 213  Q
    |||||||||||| |||||||||||||||| || ||||| || |||| |||||| ||||| |||||||||    
T  40073371 atggtatcagagcttgtcgaattcaagagccacctaccgattcacgaaccaagcccaaa-agagtgttg 40073438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 42845014 - 42844934
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||| ||||||||||||||||| ||||  |  |||||||||||||||  |||||  ||  |||||||||||||    
T  42845014 aacatggtatcaaagtttgtcgaattcaagggtcacttctctatccacgcaccaaacccaaaacgaaagttgggcgtgagg 42844934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 10532263 - 10532214
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    |||||||||||||| || ||| ||||| || |||||||||||||||||||    
T  10532263 caaaatcgcaacttcctaatacttagggggtcaaaactgctattaagcct 10532214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 2120136 - 2120188
Alignment:
Q  119 tgttaggtttaaccacgatttctaacatggtatcagagtttgtcgaattcaag 171  Q
    ||||||||  || |||||||||||| ||| ||||||| |||||||||||||||    
T  2120136 tgttaggtccaatcacgatttctaagatgatatcagaatttgtcgaattcaag 2120188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 5325125 - 5325045
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| || ||||||||||| | | |||  |||||| ||||||||||| ||||  |||||| |||||||||||    
T  5325125 aacatggtatcagagcttatcgaattcaagggccgtctaaacctattcacgcaccaaggccaa--agagtgctgggcgtgagg 5325045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 7171644 - 7171717
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    ||||||||||||  ||||||||||||| | || ||||| || ||||||||||  ||||  ||||||||||||||||    
T  7171644 atggtatcagagcctgtcgaattcaagggccacctaccgattcacgcaccaaacccaa--agagtgttgggcgtga 7171717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 9381012 - 9381089
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgag 221  Q
    ||||||||||||||| ||||| |||||||| | || ||| |||| ||| ||||||| ||||   ||||||||||||||||    
T  9381012 aacatggtatcagagcttgtcaaattcaagggccacctaactattcacacaccaagcccaa--tgagtgttgggcgtgag 9381089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 2904908 - 2904986
Alignment:
Q  144 catggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||| |||  |||||||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||||    
T  2904908 catggtattagaacttgtcgaattcaagggtcatttaccaatccacgcaccaagcccaaaaagagtgttgggcgtgagg 2904986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 11316955 - 11317033
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || |||||||| ||||||||||| ||||  |||||| |||||||||||    
T  11316955 aacatggtatcagagcttgtcgaattcaagggccacctacctattcacgcaccaagcccaa--agagtgctgggcgtgagg 11317033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 29742631 - 29742553
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | ||  ||||||| ||||||||||| ||||  ||||||||||||||||||    
T  29742631 aacatggtatcagagcttgtcgaattcaagggccacttacctattcacgcaccaagcccaa--agagtgttgggcgtgagg 29742553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 30526950 - 30527028
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||||||||||||||||||||| | || ||| |||| ||||||||||| ||||  |||||||||| |||||||    
T  30526950 aacatggtatcagagtttgtcgaattcaagggacacctaactattcacgcaccaagcccaa--agagtgttggacgtgagg 30527028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 26098454 - 26098534
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| ||||||| |||||  | || |||||||||||||||||||| | ||| |||||| |||||||||||    
T  26098454 aacatggtatcagagcttgtcgagttcaaagggcacctacctatccacgcaccaagtctaaaaagagtgatgggcgtgagg 26098534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 8929957 - 8930021
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| |||||||||||||||| || ||||||||  |||||||||  ||||||||    
T  8929957 aacatggtatcagagcttgtcgaattcaagagccacctacctattaacgcaccaaatccaaagag 8930021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 25998929 - 25999009
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||| ||||||||  | || |||||||||||||||||||| | |||  ||||| |||||||||||    
T  25998929 aacatggtatcagagcttgttgaattcaaagggcacctacctatccacgcaccaagtctaaaaggagtgatgggcgtgagg 25999009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 26098660 - 26098740
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||  |||||||||||||  | || |||||||||||||||||||| | ||| |||||| |||| ||||||    
T  26098660 aacatggtatcagaacttgtcgaattcaaagggcacctacctatccacgcaccaagtctaaaaagagtgatgggtgtgagg 26098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 30539347 - 30539411
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||| ||||| || |||||||||||||| | || |||||||||||||||||||| ||||||||    
T  30539347 aacatgctatcatagcttgtcgaattcaagggccacctacctatccacgcaccaagcccaaagag 30539411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 19712601 - 19712525
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    ||||||||||||||  |||||||||||||| | || ||||| || ||||||||| | ||||  ||||||||||||||||    
T  19712601 aacatggtatcagaacttgtcgaattcaagggccacctaccgattcacgcaccatgcccaa--agagtgttgggcgtga 19712525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 3921617 - 3921654
Alignment:
Q  119 tgttaggtttaaccacgatttctaacatggtatcagag 156  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  3921617 tgttaggtttaaccatgatttctaatatggtatcagag 3921654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 13692362 - 13692293
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgg 214  Q
    ||||||| |||| |||||||||||||| ||||  || |||||||||||| ||| |||||  |||||||||    
T  13692362 atggtattagagcttgtcgaattcaagggtcacttatctatccacgcactaagcccaaaatgagtgttgg 13692293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 24558698 - 24558759
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||| |||||||||||| | | || ||||| || ||||||||||| ||||||||    
T  24558698 atggtatcagagcttgtcgaattcatgggccacctaccgattcacgcaccaagcccaaagag 24558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 12766480 - 12766536
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaatat 63  Q
    ||||||||||||||  ||| | ||||| ||  |||||||||||||||||||||||||    
T  12766480 caaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagccttaaatat 12766536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 4258196 - 4258118
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || ||||||||||||| |||||| ||||  ||||||||||||||||||    
T  4258196 aacatggtatcagagcttgtcgaattcaagggccacctacctatccacgtaccaagcccaa--agagtgttgggcgtgagg 4258118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 6751702 - 6751624
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||| ||||  |||||| |||||||||||    
T  6751702 aacatggtatcagagcttgtcgaattcaagggtcacctacctattcacgcaccaagcccaa--agagtgctgggcgtgagg 6751624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 33855597 - 33855677
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||||||||||||||||||||  | || |||||||||||||||||||| | ||| |||||| |||| ||||||    
T  33855597 aacatggtatcagagtttgtcgaattcaaagggcacctacctatccacgcaccaagtctaaaaagagtgatgggtgtgagg 33855677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 6782920 - 6783023
Alignment:
Q  119 tgttaggtttaaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagagagtgttgggc 216  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||||| | |  ||  |||||| ||||||||||| ||||  |||||| |||||    
T  6782920 tgttaggctcaaccacgatttctaacatggtatcagagcttgtcgaattcaagggccgcctaaacctattcacgcaccaagcccaa--agagtgctgggc 6783017  T
Q  217 gtgagg 222  Q
    ||||||    
T  6783018 gtgagg 6783023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 35828397 - 35828347
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcctt 57  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  35828397 caaaatcgcaactttctgatatttaagaggtcaaaactgctattaagcctt 35828347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 23821526 - 23821449
Alignment:
Q  143 acatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||| ||||||||||||||||||| || | |||||||| ||||||||||| ||||  |||||| |||||||||||    
T  23821526 acatggtattagagtttgtcgaattcaagggttacctacctattcacgcaccaagcccaa--agagtgatgggcgtgagg 23821449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 48113907 - 48113982
Alignment:
Q  144 catggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||| |||||||||||||| | || |||||||||||||| ||||| |||||   ||||||||||||||||    
T  48113907 catggtatcagagcttgtcgaattcaagggacacctacctatccacgcgccaagcccaaa---agtgttgggcgtgagg 48113982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 258541 - 258617
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    ||||||||||||||| |||||||||||||| | || ||||| || ||||||||||| ||||  ||||||||||||||||    
T  258541 aacatggtatcagagcttgtcgaattcaagggccacctaccgattcacgcaccaagcccaa--agagtgttgggcgtga 258617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 8681996 - 8682075
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgc-accaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | |||| |||||| ||||| ||||||| |||  ||||||||||||||||||    
T  8681996 aacatggtatcagagcttgtcgaattcaagggccatcaacctattcacgcaaccaagatcaa--agagtgttgggcgtgagg 8682075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 16565006 - 16565084
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| || ||||||||||| | || ||||| ||||||| |||||| ||||  ||||||||||||||||||    
T  16565006 aacatggtatcagagcttatcgaattcaagggccacctaccaatccacggaccaagcccaa--agagtgttgggcgtgagg 16565084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 16600656 - 16600578
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| || ||||||||||| | || ||||| ||||||| |||||| ||||  ||||||||||||||||||    
T  16600656 aacatggtatcagagcttatcgaattcaagggccacctaccaatccacggaccaagcccaa--agagtgttgggcgtgagg 16600578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 6813275 - 6813211
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| |||||||||||||| | || |||| ||| ||||||||||| ||||||||    
T  6813275 aacatggtatcagagcttgtcgaattcaagggccacctacatattcacgcaccaagcccaaagag 6813211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 43366318 - 43366393
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||  |||||||||||||| |||| ||| |||| ||||||||||  ||  ||||||||||||||||||||    
T  43366318 atggtatcagaccttgtcgaattcaagtgtcacctaactattcacgcaccaaatcc--agagagtgttgggcgtgagg 43366393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 6329653 - 6329732
Alignment:
Q  141 taacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||| |  |||||||||||||||| || |||| ||||||| ||||||| ||  || |||||||| ||||||||    
T  6329653 taacatggtatcaaaacttgtcgaattcaagagccacctacatatccacacaccaagccc--agggagtgttgagcgtgagg 6329732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 21939340 - 21939389
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    ||||||||||||||  ||||| ||||| || |||||||||||||||||||    
T  21939340 caaaatcgcaacttcgtgatacttagggggccaaaactgctattaagcct 21939389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 5266225 - 5266285
Alignment:
Q  146 tggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||  ||||||||||||| |||| ||||| || ||||||| ||| ||||||||    
T  5266225 tggtatcagagcctgtcgaattcaagggtcacctaccgattcacgcactaagcccaaagag 5266285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 7832952 - 7832876
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagag-tgttgggcgtga 220  Q
    ||||||||||||  ||||||||||||| |||  ||||| || |||||| |||| |||||||| | ||||||||||||    
T  7832952 atggtatcagagcctgtcgaattcaagggtcccctaccgattcacgcatcaagcccaaagagcgctgttgggcgtga 7832876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 21938162 - 21938119
Alignment:
Q  8 aaaatcgcaactttctgatatttaggagggcaaaactgctattaa 52  Q
    |||||||||||||| ||||||||||| || |||||||||||||||    
T  21938162 aaaatcgcaactttatgatatttagg-ggccaaaactgctattaa 21938119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 24426661 - 24426725
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||| |  |||| ||||||| | |||| |||||||||||||||||||  ||||||||    
T  24426661 aacatggtatcaaaacttgtagaattcatgggtcacctacctatccacgcaccaaacccaaagag 24426725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 39808591 - 39808559
Alignment:
Q  139 tctaacatggtatcagagtttgtcgaattcaag 171  Q
    |||||||||||||||||| ||||||||||||||    
T  39808591 tctaacatggtatcagagcttgtcgaattcaag 39808559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1138 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 2069 - 1993
Alignment:
Q  144 catggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||| ||||||||||||||||||||||| |||| ||||| || ||||||||||| ||||  ||||||||||||||||||    
T  2069 catgctatcagagtttgtcgaattcaagggtcacctaccgattcacgcaccaagcccaa--agagtgttgggcgtgagg 1993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 32667087 - 32667154
Alignment:
Q  139 tctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||||||||| |||||||||||||| | |||||||| || ||||||||||| ||||||||    
T  32667087 tctaacatggtatcagagcttgtcgaattcaagggccatctaccgattcacgcaccaagcccaaagag 32667154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 31227149 - 31227204
Alignment:
Q  2 aggggcaaaatcgcaactttctgatatttaggagggcaaaactgctattaagcctt 57  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  31227149 agggtcaaaatcgcaacttcctgatatttaggaggccaaaactgctattaaacctt 31227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 2464934 - 2465009
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||| |||| ||||||||| | || |||||||||||| ||||||| ||||  ||||||||||||||||||    
T  2464934 atggtatcagagcttgttgaattcaagcgccacctacctatccacacaccaagcccaa--agagtgttgggcgtgagg 2465009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 93727 - 93672
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaag 197  Q
    ||||||||||||||||||||| |||||||| | || |||||||| |||||||||||    
T  93727 aacatggtatcagagtttgtcaaattcaagggccacctacctattcacgcaccaag 93672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 10571029 - 10571076
Alignment:
Q  119 tgttaggtttaaccacgatttctaacatggtatcagagtttgtcgaat 166  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||    
T  10571029 tgttaggctcaaccacgatttctaagatggtatcagagtttgtcgaat 10571076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 33277546 - 33277467
Alignment:
Q  141 taacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||||  |||| ||||||||||| |||| |||||||| ||||||||||  ||||  ||| ||||||||||||||    
T  33277546 taacatggtatcattgtttttcgaattcaagggtcacctacctattcacgcaccaattccaa--agattgttgggcgtgagg 33277467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 4439303 - 4439218
Alignment:
Q  136 atttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgag 221  Q
    |||| ||| |||||||  ||| ||||| |||||||| |||| ||||||||||| ||| ||||  |||| |||||||||||||||||    
T  4439303 atttttaatatggtatatgagcttgtcaaattcaagggtcaactacctatccatgcatcaagctcaaaaagagtgttgggcgtgag 4439218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 39108332 - 39108393
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaa 203  Q
    |||||||||||||||||||||||||||||| || |  |||| || ||||||||||| |||||    
T  39108332 aacatggtatcagagtttgtcgaattcaagggttacttaccgattcacgcaccaagcccaaa 39108393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 40009879 - 40009959
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||||||||||||||||||||| | |  ||  |||||| ||||||||||| ||||  |||||| |||||||||||    
T  40009879 aacatggtatcagagtttgtcgaattcaagggccgcctaaacctattcacgcaccaagcccaa--agagtgctgggcgtgagg 40009959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 93454 - 93399
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaag 197  Q
    ||||||||||| |||||| ||||||||||| | || |||||||| |||||||||||    
T  93454 aacatggtatcggagtttttcgaattcaagggccacctacctattcacgcaccaag 93399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 23993771 - 23993721
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcctt 57  Q
    ||||||||||||||||||||| ||||| |   |||||||||||||||||||    
T  23993771 caaaatcgcaactttctgatacttaggggataaaaactgctattaagcctt 23993721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 7257599 - 7257570
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaag 171  Q
    ||||||||||||||||||||||||||||||    
T  7257599 aacatggtatcagagtttgtcgaattcaag 7257570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 8044784 - 8044723
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||||||||||||||| | || ||||| || |||  |||||| ||||||||    
T  8044784 atggtatcagagtttgtcgaattcaagggccacctaccgattcacaaaccaagcccaaagag 8044723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 17265211 - 17265150
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||| ||||||||||||||| || ||| | || |||||||||||  |||||||    
T  17265211 atggtatcagagtctgtcgaattcaagagacacctatcgattcacgcaccaagcacaaagag 17265150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 17727312 - 17727389
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||||| |||||||||||||| | || ||  |||||| ||||||||||| ||||  |||||| |||||||||||    
T  17727312 atggtatcagagcttgtcgaattcaagggccacctaaacctattcacgcaccaagcccaa--agagtgctgggcgtgagg 17727389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 15392959 - 15393015
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaatat 63  Q
    ||||||||||||||| ||||| ||| |||  ||||||||||||||| ||| ||||||    
T  15392959 caaaatcgcaactttgtgatacttaagagaccaaaactgctattaaacctaaaatat 15393015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 39108200 - 39108264
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| |||||||||||||| || |  || | || ||||||||||| ||||||||    
T  39108200 aacatggtatcagagcttgtcgaattcaagggttacttatcgattcacgcaccaagcccaaagag 39108264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 3015613 - 3015535
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || |||||||| ||||||||||| ||||  |||||| |||||||||||    
T  3015613 aacatggtatcagagcttgtcgaattcaagggccacctacctattcacgcaccaagcccaa--agagtgatgggcgtgagg 3015535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 36307915 - 36307837
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | |||||||||||  || ||||||| ||||  |||||| |||||||||||    
T  36307915 aacatggtatcagagcttgtcgaattcaagggccatctacctattaacacaccaagcccaa--agagtgctgggcgtgagg 36307837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 18107674 - 18107610
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||| || ||||||||||||||   || |||||||||||||||||||| ||||||||    
T  18107674 aacatggtatcaaagcttgtcgaattcaaggaccacctacctatccacgcaccaagcccaaagag 18107610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 18107739 - 18107818
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgag 221  Q
    ||||| ||||||||| ||||||||||||||   || |||||||||||||||||||| ||||| | || | ||||||||||    
T  18107739 aacattgtatcagagcttgtcgaattcaaggaccacctacctatccacgcaccaagcccaaaaatagagatgggcgtgag 18107818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 15510696 - 15510623
Alignment:
Q  148 gtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||| |||||||||||||| |||  |||||||| ||||||||||| || || |||||| |||||||||||    
T  15510696 gtatcagagcttgtcgaattcaagggtcgcctacctattcacgcaccaagccccaa-agagtgctgggcgtgagg 15510623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 20364730 - 20364681
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    |||||||||||||| |||||| ||||| || |||||||||||||||||||    
T  20364730 caaaatcgcaacttcctgatacttagggggacaaaactgctattaagcct 20364681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 20369448 - 20369399
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||||    
T  20369448 caaaatcgcaactttctgatacttagcgggacaaaactgctattaagcct 20369399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 39268134 - 39268212
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||| ||||||||| | || ||||| |||||||||||||  ||||  |||||| |||||||||||    
T  39268134 aacatggtatcagagcttgttgaattcaagggccacctaccaatccacgcaccaatcccaa--agagtgctgggcgtgagg 39268212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 11896707 - 11896671
Alignment:
Q  119 tgttaggtttaaccacgatttctaacatggtatcaga 155  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11896707 tgttaggtttaaccacgatttctaatatggtatcaga 11896671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 36878438 - 36878498
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaa 202  Q
    ||||||||||||||| |||||||||||||| | ||  ||||||| ||||||||||| ||||    
T  36878438 aacatggtatcagagcttgtcgaattcaagggccacgtacctattcacgcaccaagcccaa 36878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 37782065 - 37781986
Alignment:
Q  129 aaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagag 206  Q
    |||||| || |||||||||||||||||| |||||||||||||| | |  ||  |||||| ||||||||||| ||||||||    
T  37782065 aaccaccatgtctaacatggtatcagagcttgtcgaattcaagggccgcctaaacctattcacgcaccaagcccaaagag 37781986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 18159760 - 18159714
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaag 53  Q
    ||||||||||||||||||||| ||| |||| ||||||||| ||||||    
T  18159760 caaaatcgcaactttctgatacttacgaggccaaaactgcaattaag 18159714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 37656952 - 37656910
Alignment:
Q  129 aaccacgatttctaacatggtatcagagtttgtcgaattcaag 171  Q
    |||||| || |||||||||||||||||| ||||||||||||||    
T  37656952 aaccaccatgtctaacatggtatcagagcttgtcgaattcaag 37656910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 8081128 - 8081051
Alignment:
Q  129 aaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||| ||||||||| ||||||||||||  |||||| |||||| | || ||||| || ||| ||||||| ||||||||    
T  8081128 aaccatgatttctaagatggtatcagagcctgtcgatttcaagggccacctaccgattcacacaccaagcccaaagag 8081051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 37426720 - 37426765
Alignment:
Q  8 aaaatcgcaactttctgatatttaggagggcaaaactgctattaag 53  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||    
T  37426720 aaaattgcaactttctgatacttagggggccaaaactgctattaag 37426765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 38498166 - 38498118
Alignment:
Q  8 aaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    ||||| ||||||| |||||| ||||| || |||||||||||||||||||    
T  38498166 aaaattgcaacttcctgatacttaggtggtcaaaactgctattaagcct 38498118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 12799789 - 12799853
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||  |||||||||| ||||||||    
T  12799789 aacatggtatcagagcttgtcgaattcaagggtcatctacttatttacgcaccaagcccaaagag 12799853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 35011769 - 35011849
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| |  | |||||||||||||||||||| ||||  |||| | |||||||||||    
T  35011769 aacatggtatcagagcttgtcgaattcaagggctacctacctatccacgcaccaagtccaagaagagagctgggcgtgagg 35011849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 39269385 - 39269477
Alignment:
Q  114 gattttgttaggtttaaccacgatttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||| |||||||  |||| ||||||| ||| ||||||||||||| ||||||||||||| | || ||||| || ||||||||||| ||||||||    
T  39269385 gattgtgttaggcctaactacgatttttaagatggtatcagagtctgtcgaattcaagggccacctaccgattcacgcaccaagcccaaagag 39269477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 12799985 - 12800044
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcat-ctacctatccacgcaccaagaccaaa 203  Q
    ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||    
T  12799985 atggtatcaaagtttgtcgaattcaagggtcatcctacctattcacgcaccaagtccaaa 12800044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 21833417 - 21833455
Alignment:
Q  129 aaccacgatttctaacatggtatcagagtttgtcgaatt 167  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  21833417 aaccacgatttctaacatggtatcagagcttgtcgaatt 21833455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 35015388 - 35015470
Alignment:
Q  138 ttctaacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||||||| |||||||||||||| | || ||||| || |||| |||| | ||||  |||||| |||||||||||    
T  35015388 ttctaacatggtatcagagcttgtcgaattcaagggccacctaccgattcacgtaccaggcccaa--agagtgctgggcgtgagg 35015470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 39956666 - 39956586
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || ||  |||||| ||||||||||| ||||  |||||| |||||||||||    
T  39956666 aacatggtatcagagcttgtcgaattcaagggccacctaaacctattcacgcaccaagcccaa--agagtgctgggcgtgagg 39956586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 40230631 - 40230567
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||| || |||||||||||| | | || |||||||| ||||||||||| ||||||||    
T  40230631 aacatggtatcaaagcttgtcgaattcaggggccacctacctattcacgcaccaagcccaaagag 40230567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 44145316 - 44145252
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| | ||| |||||||| | || ||||||||||||| |||||| ||||||||    
T  44145316 aacatggtatcagagctagtcaaattcaagggccacctacctatccacgtaccaagcccaaagag 44145252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 20737132 - 20737208
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    |||||||||||||||  |||||| |||||| | || ||||| || ||||||||||| ||||  ||||||||||||||||    
T  20737132 aacatggtatcagagcctgtcgatttcaagggccacctaccgattcacgcaccaagcccaa--agagtgttgggcgtga 20737208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 37223687 - 37223753
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||||| |||||||||||||| | || ||  |||||| ||||||||||| ||||||||    
T  37223687 aacatggtatcagagcttgtcgaattcaagggccacctaaacctattcacgcaccaagcccaaagag 37223753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 9264492 - 9264427
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaaga 205  Q
    ||||||||||||||| |||||||||||||| | || ||  |||||| ||||||||||| |||||||    
T  9264492 aacatggtatcagagcttgtcgaattcaagggccacctaaacctattcacgcaccaagcccaaaga 9264427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 49579179 - 49579225
Alignment:
Q  8 aaaatcgcaactttctgatatttaggagggcaaaactgctattaagc 54  Q
    |||||||||||||||||||| ||| | || |||||||||||||||||    
T  49579179 aaaatcgcaactttctgatacttaaggggtcaaaactgctattaagc 49579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 50420887 - 50420937
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcctt 57  Q
    ||||||||||||||  | ||| |||||||| ||||||||||||||||||||    
T  50420887 caaaatcgcaacttcataatacttaggaggccaaaactgctattaagcctt 50420937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 8142672 - 8142635
Alignment:
Q  119 tgttaggtttaaccacgatttctaacatggtatcagag 156  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  8142672 tgttaggtctaaccacgatttctaagatggtatcagag 8142635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 16883800 - 16883849
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    ||||||||||||||||||||| ||||| || ||||| | |||||||||||    
T  16883800 caaaatcgcaactttctgatacttagggggccaaaaatactattaagcct 16883849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 25578920 - 25578859
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||| | ||||||||||||| |||| ||||| || ||||||| ||| ||||||||    
T  25578920 atggtatcagattctgtcgaattcaagggtcacctaccgattcacgcactaagcccaaagag 25578859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 27177524 - 27177602
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||| ||||| | || ||| |||| || |||||||| ||||  ||| ||||||||||||||    
T  27177524 aacatggtatcagagcttgtcgaaatcaagggccacctagctattcatgcaccaagcccaa--agaatgttgggcgtgagg 27177602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 33909824 - 33909746
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||||||| |||| |||||||||||||| | || |||||||| | || |||||| ||||  ||||||||||| ||||||    
T  33909824 aacatggtattagagcttgtcgaattcaagggccacctacctattcgcgtaccaagcccaa--agagtgttgggtgtgagg 33909746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 40926895 - 40926956
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||  |||||| |||||| | || ||||| |||||||||||||| ||||||||    
T  40926895 atggtatcagagcctgtcgatttcaagggccacctaccgatccacgcaccaagcccaaagag 40926956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 15857086 - 15857164
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    |||||| ||||| || |||||||||||||| | || |||||||| ||||||||||| ||||  ||| ||||||||||||||    
T  15857086 aacatgttatcaaagcttgtcgaattcaagggccacctacctattcacgcaccaagcccaa--agactgttgggcgtgagg 15857164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 22188800 - 22188861
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    ||||||||||||| |||||| |||||| || ||||||| || ||||||||||| ||||||||    
T  22188800 atggtatcagagtctgtcgatttcaagggtaatctaccgattcacgcaccaagcccaaagag 22188861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 25186638 - 25186714
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagag-tgttgggcgtga 220  Q
    ||||||||||||  ||||||||||||| |||| ||||  || ||||||||||| |||||||| | ||||||||||||    
T  25186638 atggtatcagagcctgtcgaattcaagggtcacctactgattcacgcaccaagcccaaagagtgctgttgggcgtga 25186714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 36039981 - 36039930
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaa 196  Q
    |||||||||||| |||||||||||||| | |||||| |||| ||||||||||    
T  36039981 atggtatcagagcttgtcgaattcaagggccatctatctattcacgcaccaa 36039930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 41456498 - 41456424
Alignment:
Q  145 atggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    ||||||||||||| ||||||||||||| | || ||||| || ||||||||||  || || ||||||||||||||||    
T  41456498 atggtatcagagtctgtcgaattcaagggccacctaccgattcacgcaccaaagcccaa-agagtgttgggcgtga 41456424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 43599423 - 43599503
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatct--acctatccacgcaccaagaccaaagagagtgttgggcgtgagg 222  Q
    ||||||||||||||| |||||||||||||| | || ||  |||||| ||||||||||| ||||| |||||| |||||||||||    
T  43599423 aacatggtatcagagcttgtcgaattcaagggccacctaaacctattcacgcaccaag-ccaaa-agagtgctgggcgtgagg 43599503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 30065897 - 30065974
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagagagtgttgggcgtga 220  Q
    ||||||||||| ||| |||||||||| ||| | || |||||||||||| | || || ||||| ||||||||||||||||    
T  30065897 aacatggtatctgagcttgtcgaattgaag-gccacctacctatccacacgccgagcccaaaaagagtgttgggcgtga 30065974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 9498957 - 9498908
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcct 56  Q
    |||||||||||||| |||||| ||||| || |||||||| ||||||||||    
T  9498957 caaaatcgcaacttcctgatacttagggggccaaaactgttattaagcct 9498908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 9234741 - 9234797
Alignment:
Q  2 aggggcaaaatcgcaactttctgatatttaggagggcaaaactgctattaagcctta 58  Q
    |||| |||||||||||||| |||||||||| | |  ||||||| |||||||||||||    
T  9234741 agggccaaaatcgcaacttcctgatatttaagggatcaaaactactattaagcctta 9234797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 33435791 - 33435855
Alignment:
Q  142 aacatggtatcagagtttgtcgaattcaagagtcatctacctatccacgcaccaagaccaaagag 206  Q
    |||||||||||| || |||||||||||||| | || ||||  || ||||||||||| ||||||||    
T  33435791 aacatggtatcatagcttgtcgaattcaagggccacctactgattcacgcaccaagcccaaagag 33435855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 171 - 119
Alignment:
Q  8 aaaatcgcaactttctgatatttaggagggcaaaactgctattaagccttaaa 60  Q
    ||||||||||||||  || | ||||||||  ||||||||||||||||||||||    
T  171 aaaatcgcaactttgagaaagttaggaggctaaaactgctattaagccttaaa 119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 9902 - 9950
Alignment:
Q  7 caaaatcgcaactttctgatatttaggagggcaaaactgctattaagcc 55  Q
    |||||||||||||| || ||||| ||| || ||||||||||||||||||    
T  9902 caaaatcgcaacttcctaatattaagggggtcaaaactgctattaagcc 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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