View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16827_low_2 (Length: 489)
Name: NF16827_low_2
Description: NF16827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16827_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 26722143 - 26721685
Alignment:
| Q |
17 |
attctgagtgagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattg |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722143 |
attctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattg |
26722044 |
T |
|
| Q |
117 |
atggaaattacacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatattt |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26722043 |
atggaaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatattt |
26721944 |
T |
|
| Q |
217 |
gcagaacctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnng |
316 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26721943 |
gtagaacctataaagtgtagatagaaacaatctcgttatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat-----aaaaaaaag |
26721849 |
T |
|
| Q |
317 |
tgagtttgatgttcccaatcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcat |
416 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
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| T |
26721848 |
tgagtttgtttttcccaatcactttgggaacatgctcttcaaaagagagtgataagcctctaacattccttgaaaggatagcagcgacaacaccattcat |
26721749 |
T |
|
| Q |
417 |
ccttcgtctatgaaatcctctgttgtcgtgaatctaactgaaatcctcttctcttggttcattt |
480 |
Q |
| |
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| T |
26721748 |
ccttcgtctatgaaatcctctgtcgtcgtgaatctaactgaaatcctctccttttggttcattt |
26721685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 45116779 - 45117224
Alignment:
| Q |
17 |
attctgagtgagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattg |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116779 |
attctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattg |
45116878 |
T |
|
| Q |
117 |
atggaaattacacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatattt |
216 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45116879 |
atggaaattacacaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttgaaccatattt |
45116965 |
T |
|
| Q |
217 |
gcagaacctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnng |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45116966 |
gcagaacctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagat-----aaaaaaaag |
45117060 |
T |
|
| Q |
317 |
tgagtttgatgttcccaatcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcat |
416 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
45117061 |
tgaatttgatgttcccaatcactttgggagcatgctcttaaaaagagagtgatgagcctcttacattccttgaaaggatggcagcgacaacacctttcat |
45117160 |
T |
|
| Q |
417 |
ccttcgtctatgaaatcctctgttgtcgtgaatctaactgaaatcctcttctcttggttcattt |
480 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
45117161 |
ccttcgtctatgaaatcctctgtcgtcgtgaatctaactgaaatcctctcctcttggttcattt |
45117224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 2987599 - 2987153
Alignment:
| Q |
17 |
attctgagtgagaagaaaaaattaattggagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattg |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2987599 |
attctgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattg |
2987500 |
T |
|
| Q |
117 |
atggaaattacacaacaaatagagtcttgaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatattt |
216 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2987499 |
atggaaattacacaacaaatagagtattaaaccattttctcaaat-------------cataatccaaggctcatggtttttcttctttgaaccatattt |
2987413 |
T |
|
| Q |
217 |
gcagaacctataaagtgtagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagatnnnnnnnnnnnnng |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2987412 |
gcagaacctataaagtatagatagaaacaatctcattatcattattacagaataaaatgaaattaaaagtaagaagagaatgagataaaaaaaaa----g |
2987317 |
T |
|
| Q |
317 |
tgagtttgatgttcccaatcactttgggaacatgctcttcaacagagagtgataagcctcttacattccttgaatggatggcagcgacaacaccattcat |
416 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
2987316 |
tgaatttgatgttcccaatcactttgggaacatgctcttaaaaagagagtgataagcctcttacattccttgaaaggatggcagcgacaacacctttcat |
2987217 |
T |
|
| Q |
417 |
ccttcgtctatgaaatcctctgttgtcgtgaatctaactgaaatcctcttctcttggttcattt |
480 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2987216 |
ccttcgtctacgaaatcctctgtcgtcgtgaatctaactgaaatcctctcctcttggttcattt |
2987153 |
T |
|
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