View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16827_low_5 (Length: 260)
Name: NF16827_low_5
Description: NF16827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16827_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 50905835 - 50905595
Alignment:
| Q |
18 |
atcacatgccagtttaatgcagtttcatgaatcaaggttctactggctaattatcttatatgcagaaaaagtcatcgaacaaactttggtacaagttcaa |
117 |
Q |
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| T |
50905835 |
atcacatgccagtttaatgcagtttcatgaatcaaggttctactggctaattatcttatatgcagaaaaagtcatcgaacaaactttggtacaagttcaa |
50905736 |
T |
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| Q |
118 |
gttttgatctatactcctccttatgtcaaagcagttgttcctagactttcttcaaaagactgcaattatttaaaacgaaatatatacagatgttgaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50905735 |
gttttgatctatactcctccttatgtcaaagcagttgttcctagactttcttcaaaagactgcaattatttaaaacgaaatatatacagatgttgaaatt |
50905636 |
T |
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| Q |
218 |
aaaaattcaattatcagagtacagcttttctgctatctgtg |
258 |
Q |
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| T |
50905635 |
aaaaattcaattatcagagtacagcttttctgctatctgtg |
50905595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 38043085 - 38043295
Alignment:
| Q |
36 |
gcagtttcatgaatcaaggttctactggctaattatcttatatgcagaaaaag-----tcatcgaacaaactttggtacaagttcaagttttgatctata |
130 |
Q |
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| T |
38043085 |
gcagtttcattaatgaaggttctactggctaattatcatatatgcagaagaagaaaaatcatagaacaaactttggt-caagttaatgtttttagccgta |
38043183 |
T |
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| Q |
131 |
ctcctccttatg------tcaaagcagttgttcctagactttcttcaaaagactgcaattatttaaaacgaaatatatacagatgttgaaattaaaaatt |
224 |
Q |
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| T |
38043184 |
gtcctccttatggtcatgtcaaagcagttgttactggaatttcttcaaaagactacaattatttaaaacgaaatatataggtatgttgaaattaaaaatt |
38043283 |
T |
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| Q |
225 |
caattatcagag |
236 |
Q |
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||||| |||||| |
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| T |
38043284 |
caattttcagag |
38043295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 55087247 - 55087303
Alignment:
| Q |
140 |
atgtcaaagcagttgttcctagactttcttcaaaagactgcaattatttaaaacgaa |
196 |
Q |
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| T |
55087247 |
atgtcaaagcagttgttgctagacattcttcaaaagactgcacttatttaaaacgaa |
55087303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 48839493 - 48839436
Alignment:
| Q |
144 |
caaagcagttgttcctagactttcttcaaaagactgcaattatttaaaacgaaatata |
201 |
Q |
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| T |
48839493 |
caaagcagctgttgctagactttcttcgatagactgcaattatttcaaacaaaatata |
48839436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 50914406 - 50914446
Alignment:
| Q |
161 |
gactttcttcaaaagactgcaattatttaaaacgaaatata |
201 |
Q |
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| T |
50914406 |
gactttcctcaaaagactgcaattattttaaactaaatata |
50914446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 3071293 - 3071239
Alignment:
| Q |
149 |
cagttgttcctagactttcttcaaaagactgcaattatttaaaacgaaatatata |
203 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||| |
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| T |
3071293 |
cagttgttgctagactttattcaaaagactgcaattatttaaaacaaaacatata |
3071239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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