View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16827_low_6 (Length: 254)
Name: NF16827_low_6
Description: NF16827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16827_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 47102523 - 47102296
Alignment:
| Q |
13 |
aaaatattcttaaaaaatatcatatgatctcattttctgaaattaannnnnnnnagtggccgggatttgaac-cccaaaccttacatatgcattgtccat |
111 |
Q |
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| T |
47102523 |
aaaatattcttaaaaaatatcatatgatctcattatctgaatttaattttttttaatagtcggagtttgaactcccagaccttacatgt--attgtccat |
47102426 |
T |
|
| Q |
112 |
accatcg----gtacttacttattcctaaaaccataaattagttgtccctccaaacttggccccaactcacgtatttgggaggccaaacacattattaga |
207 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47102425 |
accatccatcagtacttacttattcctaaaaccataaattatttgtccctccaaacttggccccaactcacgtatttgggaggccaaacacatcattaga |
47102326 |
T |
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| Q |
208 |
agctatcttccgataatacaaacctattgg |
237 |
Q |
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| T |
47102325 |
agctatcttccgataatacaaacctattgg |
47102296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 19126670 - 19126722
Alignment:
| Q |
68 |
gtggccgggatttgaaccccaaaccttacatat-----gcattgtccatacca |
115 |
Q |
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| T |
19126670 |
gtggccaggatttgaaccccaaaccttacatattttatgcattgtccatacca |
19126722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 14589790 - 14589823
Alignment:
| Q |
67 |
agtggccgggatttgaaccccaaaccttacatat |
100 |
Q |
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| T |
14589790 |
agtggccgggatttgaacctcaaaccttacatat |
14589823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 3052249 - 3052217
Alignment:
| Q |
68 |
gtggccgggatttgaaccccaaaccttacatat |
100 |
Q |
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| T |
3052249 |
gtggctgggatttgaaccccaaaccttacatat |
3052217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 32559372 - 32559340
Alignment:
| Q |
68 |
gtggccgggatttgaaccccaaaccttacatat |
100 |
Q |
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| T |
32559372 |
gtggccgggatttgaaccccagaccttacatat |
32559340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 1112535 - 1112507
Alignment:
| Q |
73 |
cgggatttgaaccccaaaccttacatatg |
101 |
Q |
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| T |
1112535 |
cgggatttgaaccccaaaccttacatatg |
1112507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 8261436 - 8261468
Alignment:
| Q |
68 |
gtggccgggatttgaaccccaaaccttacatat |
100 |
Q |
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| T |
8261436 |
gtggccgggattcgaaccccaaaccttacatat |
8261468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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