View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16827_low_9 (Length: 222)
Name: NF16827_low_9
Description: NF16827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16827_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 3208741 - 3208922
Alignment:
| Q |
24 |
actgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208741 |
actgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattg |
3208840 |
T |
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| Q |
124 |
cagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggcc |
205 |
Q |
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| T |
3208841 |
cagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagttccatggcc |
3208922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 3202774 - 3202948
Alignment:
| Q |
31 |
catccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtacc |
130 |
Q |
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||||||||||||||||||| |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202774 |
catccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtacc |
3202873 |
T |
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| Q |
131 |
attagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggcc |
205 |
Q |
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| T |
3202874 |
attggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagttccgtggcc |
3202948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 3216680 - 3216861
Alignment:
| Q |
24 |
actgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattg |
123 |
Q |
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||||||||||||||||| |||||| ||| ||| |||| |||||| | || ||||||||||||| |||||||||||||||| |||||||||||| ||| |
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| T |
3216680 |
actgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctgttg |
3216779 |
T |
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| Q |
124 |
cagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggcc |
205 |
Q |
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| ||||| ||||| || || |||||||| || || || || |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
3216780 |
ccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggcc |
3216861 |
T |
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