View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16828_high_1 (Length: 663)
Name: NF16828_high_1
Description: NF16828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16828_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 283 - 648
Target Start/End: Complemental strand, 44155892 - 44155526
Alignment:
| Q |
283 |
aaaataataactagctgtagatggaatatatatgaacttacttccagggtacatccccaagcaacatccagtcaccatctttatcctcataggtagccat |
382 |
Q |
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| T |
44155892 |
aaaataataactaggtgtagatggaatatatatgaacttacttccagggtacatccccaagcaacatccagtcaccatctttatcctcataggtagccaa |
44155793 |
T |
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| Q |
383 |
atattcattcgtattttttctagaatccatgaatttcttctcattcatcaaatcattacctgcaataattaattaataacagttggtatacaaaaacaaa |
482 |
Q |
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| T |
44155792 |
atattcattcgtattttttctagaatccatgaatttcttctcattcatcaaatcgttacctgcaataattaattaataatagttggtatacaaaaacaaa |
44155693 |
T |
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| Q |
483 |
gcaaattactctcataacacacaacatatattaatgaaacataaaaatgacatggacacaaacacaatatatcattg-ttgatgatgaatgaatacgtac |
581 |
Q |
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| T |
44155692 |
gcaaattactctcataacacacaacatatattaatgaaacataaaactgacatggacacaaacacaatatatcattgtttgatgatgaatgaatacgtac |
44155593 |
T |
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| Q |
582 |
gaatagtgaagcaattagtagaaaacatggtattcaatgcagtgagaagattgtcataacattcata |
648 |
Q |
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| T |
44155592 |
gaatagtgaagcaattagtagaaaacatggtattcaatgcagtgagaagattgtcataacattcata |
44155526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 44156001 - 44155920
Alignment:
| Q |
190 |
gaaacatatagtatagtattgtatgaaatttgatgaatatatactc-taaggtttcaaaatgtaaaaaatatatagttttat |
270 |
Q |
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| T |
44156001 |
gaaagatatagtatagtattgtatgaaatttgatgaatatatactcttaaggtttcaaaatgtaaaaaatatatagttttat |
44155920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 44156103 - 44156034
Alignment:
| Q |
108 |
ttgtcccccgagctaatcataagccttatcctcttacatgattcaacaaacatcctagaggaaaggaaag |
177 |
Q |
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| T |
44156103 |
ttgtcccccgagctaatcataagccttatcctcttacatgattcaacaaacatcctagaggaaaggaaag |
44156034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44156210 - 44156154
Alignment:
| Q |
1 |
atcagggggtcaagaaccaaacttgtgatatcaatcaatcctataattatattgtgt |
57 |
Q |
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| T |
44156210 |
atcagggggtcaagaatcaaacttgtgatatcaatcaatcctataattatattgtgt |
44156154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 33218436 - 33218372
Alignment:
| Q |
312 |
atatgaacttacttccagggtacatccccaagcaacatccagtcaccatctttatcctcataggt |
376 |
Q |
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||||| ||||||||||| || ||||| |||| | |||||| |||||||||||||| |||||||| |
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| T |
33218436 |
atatgcacttacttccatggaacatcaccaactagcatccaatcaccatctttatcttcataggt |
33218372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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